CB290560

Overview
NameCB290560
Unique NameCB290560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:238..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290560 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.939e-49
Identity = 100/113 (88.50%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:  456 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISALEGAESTVIMASGMCASTVMLLALVPAGGHI 794
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISALEGAEST++MASGMCASTVMLLALVPAGGHI
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHI 274

HSP 2 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:  114 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 299
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of CB290560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.939e-4988.50Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290560 ID=CB290560; Name=CB290560; organism=Citrus sinensis; type=EST; length=796bp
GCAGAGAGAGCAAAGCCGCCGTTCAATACGACGTCGTAATGGCCGTGTCC
TCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCTTCATGTTCGTCTTT
TGAGTGCCGTTCCGATCCCGACTTCTCGGGCTCGGCTCGGTTTGATAAAC
CGAGGATCTCGGCGGCGCGAGTCATCGGAGCGTCGACGGCGTCGTTTAGC
GGCCTGTCGTCTCTGATTTTCAGGTTTCCGCCGAACTTCGTGCGCCAGCT
TAGCACGAAGGCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCAAATCG
TGGCGGCTTCGTGGTCGAACGGTGTGGGTTCCGGCTCTAACTCGGCGGCG
GCTGCAGCAGCTTCCGCTGCCCCCGCCCCGCCCGTCCCCGTCGAGATTAC
GAGCGGCGATGACATCGCGCTTGTTGACGGATTGAAAAATGTACATCTGG
AGGCCCTCGCTGATTTGAAAAACGAGGCTTCGTTTTTGAGCTCCGATGGG
AGCCTTGCAATTCATGCCGGTGAAAGATTAGGTCGTGGTATAGTAACAGA
TGCAATTACTACCCCAGTGGTGAATACTTCTGCTTACTTCTTTAAGAAAA
CTGCTGAGCTTATTGATTTCAAGGAGAAACGTCGTGCAAGTTTTGAATAT
GGGAGGTATGGAAACCCAACAACTGTGGTCGTTGAGGAGAAGATAAGTGC
ACTTGAGGGGGCTGAATCAACTGTGATTATGGCATCTGGAATGTGTGCTA
GCACAGTCATGTTGTTGGCATTGGTTCCAGCCGGTGGGCATATTGT
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