CB290589

Overview
NameCB290589
Unique NameCB290589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290589_ssr135 microsatellite CB290589_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290589_ssr47 microsatellite CB290589_ssr47:47..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:156..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290589 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.608e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -1 
Query:  363 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 653
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of CB290589 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = -1 
Query:  366 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 653
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of CB290589 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.853e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -1 
Query:  366 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 653
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of CB290589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.608e-48100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.585e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.853e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cd07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290589 ID=CB290589; Name=CB290589; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTCCAACTAGTATCCGGACTGAGGCCGTTGGATTT
ATTTATTTATTTATTAATCTGCTACACATGGTCCCAATCCTGGACTTTAA
TTACAGTCTGGGATCCCAGACCGCATAACCCCTCTATATATATATAAAAG
TAATTTTGCAATACAGGAATTCTTTACTTTTATTGACAAGTTAATAGACA
AAATCATGGAAATGCACTATTAAAAGTTGTCAATAACAGTTGATATCAAT
ACAACAGCAAAGACTTAAGAGTGAGTCAAAATTGCTACTGTAACAACATC
ACTTAAAAAGTTAAAGCACCGCTAACAGCAAAGGATCTGCTGCTATGCGC
CACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCAACAGCATCTCTCGAA
GCTCTGCTGGATCAATCTCGACCGCCCGATTCTCCGGCCTGTAGTACCCA
GTGATGGGATCTGGGGCCCAGGCAGAAGAGGCCCCAGAATCCTCTCTCAC
CGCAGGCCTCAAATCATTTTTCTCCATGATACCAGTCCGAGATATGGTCC
CCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCTAATGGAGAGCGAGATG
CCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTTGAAGAGAGAGCGGGC
CATTGTTTTATTTACTTATAGAACTTAATAGATATGAAGATAGCTAGCTG
GGATGTTTCTGTACAGTGCTACTACAGAAGAAGAAAGATTCTGCTCCTGC
AGTAGCTATAGGCAAAAGCTAGCGGCTCGCTCTCT
back to top