CB290597

Overview
NameCB290597
Unique NameCB290597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig141 contig Csv1_Contig141:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.175e-63
Identity = 129/248 (52.02%), Postives = 167/248 (67.34%), Query Frame = 2
Query:  113 ECTCDPEDDDRDKTQ-ALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDN--VSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            +CT   +   +D+ + A K KL +IA +LVAG +GV LP++GK IPAL PE  IFF++KAFAAGVIL TGFVH+LPDAFE L+SPCL++     FPF GF AM++A+GTLMID FAT Y    +  ++ G  + N  V +EE  G                        G +EL+R R++S VLE+GI+VHSVIIGISLG S+S  TIKPL+AAL+FHQFFEG+GLGGCI+ A  KS+   ++A FFS
Sbjct:   31 DCTSHDDPVSQDEAEKATKLKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQHFSNNHGSKQVNVVVDEEEHAGHVHIHTHASHGHTH----------GSTELIRRRIVSQVLEIGIVVHSVIIGISLGASQSIDTIKPLMAALSFHQFFEGLGLGGCISLADMKSKSTVLMATFFS 268          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.178e-61
Identity = 129/252 (51.19%), Postives = 164/252 (65.08%), Query Frame = 2
Query:  113 ECTCDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEK-----VGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRH--RVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            +C C  EDD+ +K  A KYK+AAI S+L AG IGV  P+LGK  P+L PE   FF+ KAFAAGVIL+TGF+HVLP+ +E LTSPCL    W +FPFTGF AMVAAI TL +D    S+ATSY+ K+HF  ++     EE+      G                    +E +GES++  H  RV++ VLE+GI+VHSV+IGISLG S+SP T K L AAL FHQ FEG+GLGGCI Q  F    + I+++FFS
Sbjct:   30 KCECSHEDDEANKAGAKKYKIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCLKGEAW-EFPFTGFIAMVAAILTLSVD----SFATSYFHKAHFKTSKRIGDGEEQDAGGGGGGGDELGLHVHAHGHTHGIVGVE-SGESQVQLHRTRVVAQVLEVGIIVHSVVIGISLGASQSPDTAKALFAALMFHQCFEGLGLGGCIAQGNFNCMSITIMSIFFS 275          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.033e-60
Identity = 132/245 (53.88%), Postives = 162/245 (66.12%), Query Frame = 2
Query:  113 ECTCDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            +C C  EDD  +K  A KYK+AAI ++L+AG IGV  P+LGK  P+L PE   FF+ KAFAAGVIL+TGF+HVLP+A+E L SPCL    W +FPFTGF AM+AAI TL +D FATS   S+Y KSH  +A   VSD E  GE                  S   + + ++LR RVI+ VLELGI+VHSV+IGISLG S+SP   K L  AL FHQ FEG+GLGGCI Q KFK   V I++ FF+
Sbjct:   35 KCECSHEDDHENKAGARKYKIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCLTSEAW-EFPFTGFIAMIAAILTLSVDTFATS---SFY-KSHC-KASKRVSDGE-TGE------------------SSVDSEKVQILRTRVIAQVLELGIIVHSVVIGISLGASQSPDAAKALFIALMFHQCFEGLGLGGCIAQGKFKCLSVTIMSTFFA 254          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.455e-53
Identity = 107/236 (45.34%), Postives = 154/236 (65.25%), Query Frame = 2
Query:  146 DKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVG--EXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            DK +AL  KL +I SIL+   IGV LP   ++IPA  PE+  F ++K+FA+G+ILSTGF+HVLPD+FE L+SPCL+++PW  FPF GF AM++A+ TLM+D+  TS  T   RK    +     + ++++G  +                    E     +LLR+R++++VLELGI+V S++IG+S+G + +  TIK LVAAL FHQ FEGMGLGGCI QA++     A++A FF+
Sbjct:   44 DKNKALDLKLLSIFSILITSLIGVCLPFFARSIPAFQPEKSHFLIVKSFASGIILSTGFMHVLPDSFEMLSSPCLNDNPWHKFPFAGFVAMMSAVFTLMVDSITTSVFTKSGRKDLRADVASVETPDQEIGHVQVHGHVHSHTLPHNLHGENDKELGSYLQLLRYRILAIVLELGIVVQSIVIGLSVGDTNNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYGWVKKAVMAFFFA 279          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.469e-53
Identity = 112/245 (45.71%), Postives = 152/245 (62.04%), Query Frame = 2
Query:  113 ECTCDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            EC  D  D   DKT+AL  K+ AI +ILV   IGV  P+  + +  L P+ KIF +IK FA+G+IL TGF+HVLPD+FE L+SPCL+++PW  FPFTGF AM++ + TL ID+ ATS    Y +K+   ++E+  +                                 +LLR+RVI+ VLELGI+VHSV+IG+SLG +    TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF+
Sbjct:   32 ECETDSTDSCIDKTKALPLKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFTGFVAMLSGLVTLAIDSIATSL---YTKKAVADDSEERTT-----------PMIIQIDHLPLTTKERSSTCSKQLLRYRVIATVLELGIIVHSVVIGLSLGATNDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNVKKFVMAFFFA 262          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.660e-50
Identity = 109/235 (46.38%), Postives = 148/235 (62.98%), Query Frame = 2
Query:  146 DKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCL-DEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            +K  ALKYK+ A  SIL+AG  GV LP+ G     L  E   F  +KAFAAGVIL+TGFVH+LPDA E+LTS CL +E PW DFP TG  AM A+I T++I++FA+ Y  +  R +  G+     +  E+                      I    +   +R ++++ +LELGI+VHSVIIGISLG S S  TIKPL+AA+TFHQ FEG GLGGCI++AKF+ + + ++ +FF+
Sbjct:   42 EKASALKYKIIAFFSILIAGVFGVCLPIFG-----LKTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAMAASILTMLIESFASGY-LNRSRLAKEGKTLPVSTGGEEEHAHTGSAHTHASQGHSHGSLLIPQDDDHIDMRKKIVTQILELGIVVHSVIIGISLGASPSVSTIKPLIAAITFHQLFEGFGLGGCISEAKFRVKKIWVMLMFFA 270          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.809e-49
Identity = 108/246 (43.90%), Postives = 152/246 (61.79%), Query Frame = 2
Query:  122 CDPEDDD---RDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFA-TSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            C  E  D    +  +A K K+ AI SILVA  IGV LP+  ++IPAL P+R++  ++K  A+GVIL+TGF+HVLPD+F++LTS CL E PW  FPF  F  M++A+  LMI++FA  +YA    ++   GE     +    V                     +     SELLR++VI+ +LELGI+VHSV+IG+++G S++  T++ L+AAL FHQ FEGMGLGG I QA+FKS+    +  FFS
Sbjct:   37 CKAESGDLSCHNNKEAQKLKIIAIPSILVASMIGVSLPLFSRSIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPEDPWQKFPFATFITMISALLVLMIESFAMCAYARRTSKRE--GEVVPLENGSNSVDTQNDIQTLENGSSYVEKQEKVNEDKTSELLRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCFHQLFEGMGLGGSILQAQFKSKTNWTMVFFFS 280          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.669e-49
Identity = 116/283 (40.99%), Postives = 157/283 (55.48%), Query Frame = 2
Query:  122 CDPEDDD--RDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAE-----------------DNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYA-------------------GESEL---LRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            CD  + D  RD + A   K  AIASIL+AGA GV +P++G+    L  E  +F   KAFAAGVIL+TGFVH+L    E L++PCL + PW+ FPF GF AMVAA+ TL++D   T Y   Y RK    +A                  + V+D +  GE                     ++                   G S++    RH V+S +LELGI+ HS+IIG+SLG S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+
Sbjct:   10 CDAGESDLCRDDSAAFLLKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPDFPWSKFPFPGFFAMVAALATLLVDFMGTQY---YERKQERNQAATEAAAGSEEIAVVPVVGERVTDNKVFGEEDGGGIHIVGIRAHAAHHRHSHSNSHGTCDGHAHGHSHGHMHGNSDVENGARHVVVSQILELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFA 289          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.106e-48
Identity = 108/252 (42.86%), Postives = 153/252 (60.71%), Query Frame = 2
Query:  113 ECTCDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSY-------YRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            EC  +  +   +K +AL  K+ AI  IL+A  IGV  P+  + +  L P+  IF +IK FA+G+IL TGF+HVLPD+FE L+S CL+E+PW  FPF+GF AM++ + TL ID+ ATS  TS        +   H     ++V+   K  +                      +  ++LLR+RVI++VLELGI+VHSV+IG+SLG +    TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF+
Sbjct:   25 ECGSESANPCVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAVGIMPHGHGHGHGPANDVTLPIKEDD----------------------SSNAQLLRYRVIAMVLELGIIVHSVVIGLSLGATSDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFA 254          
BLAST of CB290597 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 102/244 (41.80%), Postives = 143/244 (58.61%), Query Frame = 2
Query:  122 CDPEDDDR--DKTQALKYKLAAIASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAGVILSTGFVHVLPDAFENLTSPCLDEHPWADFPFTGFAAMVAAIGTLMIDAFATSYATSYYRKSHFGEAEDNVSDEEKVGEXXXXXXXXXXXXXXXXXXSIEYAGESELLRHRVISLVLELGILVHSVIIGISLGTSESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFS 847
            CD   D+   +K +AL  K+ AI +IL    IGV  P+  + I  L P+   F ++K F++G+IL TGF+HVLPD+FE L+S CL ++PW  FPF GF AM++ + TL ID+  TS    Y  K+  G     V DEE   +                   +    + +LLR++VI++VLE+GIL HSV+IG+SLG +    TIK L+ AL FH  FEG+GLGGCI QA F +    ++A FF+
Sbjct:   29 CDSGFDNPCINKAKALPLKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSL---YTGKNSVGP----VPDEEYGIDQEKAIHMVGHNHSHGHGVVLATKDDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDSCTIKGLIIALCFHHLFEGIGLGGCILQADFTNVKKFLMAFFFT 265          
The following BLAST results are available for this feature:
BLAST of CB290597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP1_ARATH1.175e-6352.02Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP5_ARATH4.178e-6151.19Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP3_ARATH6.033e-6053.88Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP10_ARATH2.455e-5345.34Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
ZIP8_ARATH5.469e-5345.71Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
ZIP12_ARATH5.660e-5046.38Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP7_ARATH2.809e-4943.90Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]
ZIP4_ARATH3.669e-4940.99Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT1_ARATH3.106e-4842.86Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
IRT2_ARATH1.221e-4441.80Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cd11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290597 ID=CB290597; Name=CB290597; organism=Citrus sinensis; type=EST; length=849bp
GCACGTGGTAATTTTGGGGGTCAAATTCTTTAACATGATCACTTCCTCTC
GTAGTCTTTGCATCATTTTCTTTTGTATTCTTCTAGTACTACTTCCCAAC
ATAGTACGAGGAGAATGCACGTGCGATCCTGAAGACGATGATCGAGACAA
GACTCAAGCCTTAAAATATAAACTCGCCGCAATCGCTTCGATACTCGTAG
CCGGAGCCATCGGAGTTTACCTTCCGGTCCTCGGAAAAACTATCCCGGCA
CTAAGTCCGGAGAGAAAGATTTTCTTCCTAATCAAGGCCTTTGCCGCCGG
AGTTATATTATCAACTGGGTTCGTCCACGTGCTTCCCGACGCCTTCGAGA
ACTTAACGTCGCCCTGCCTCGATGAACATCCATGGGCGGATTTTCCGTTC
ACCGGATTTGCTGCCATGGTTGCTGCTATCGGGACTCTGATGATTGATGC
TTTTGCAACTTCTTATGCGACCTCTTATTATCGCAAGTCTCACTTTGGTG
AAGCGGAGGATAACGTATCAGATGAAGAGAAAGTTGGGGAGCATGCAGGT
CACGTGCATGTTCATACTCATGCAACTCATGGCCATGCTCATGGATCTAT
TGAATATGCTGGTGAATCGGAGCTTCTACGACACCGTGTCATATCTCTGG
TTTTGGAGTTGGGAATTCTTGTGCACTCGGTAATCATTGGAATTTCATTG
GGTACTTCTGAGAGTCCAAAAACTATTAAGCCTTTGGTTGCAGCGTTGAC
TTTTCATCAATTCTTTGAAGGAATGGGTCTTGGTGGTTGCATTACGCAGG
CAAAATTCAAGTCTCGAGGAGTCGCAATATTGGCCTTGTTCTTCTCTTT
back to top