CB290599

Overview
NameCB290599
Unique NameCB290599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.375e-30
Identity = 73/133 (54.89%), Postives = 91/133 (68.42%), Query Frame = -3
Query:  371 RSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIRXXXXXXXXXXES--VRRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 751
            RSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV++ LEQNTLVIR           S   RR+ +RI+LPEK+Y+TD+IKAEMKNGVL          ER ++  + VD
Sbjct:   78 RSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = -3
Query:  371 RSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIR----XXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 751
            RS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV++ LEQ+TLVIR                 RR+ +RI LP+K+Y+ D+IKAEMKNGVL          ER DV Q++++
Sbjct:   76 RSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 71/129 (55.04%), Postives = 86/129 (66.67%), Query Frame = -3
Query:  371 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIR--XXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 751
            RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++ +EQNTL I+            +S RR+ +RIDLPEKLY+ D IKAEMKNGVL          ER +V  VKVD
Sbjct:   77 RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = -3
Query:  371 RSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIRXXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 751
            RS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+V +E NTL+I+          E  RRY +RI+L   LY+ D IKAEMKNGVL          E+ DVFQV VD
Sbjct:   75 RSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = -3
Query:  371 RGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIRXXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 670
            RGWDA+ET+DAL+L +DMPGL KEDV++ +EQNTL+I+          ES RRY +RIDLP+KLY+ DQI+AEMKNGVL          ER DV  VKV+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  371 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIRXXXXXXXXXXESV--RRYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 751
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V+ EQN+LVI+          E     RY  RI+L  ++YR DQIKAEMKNGVL          +R DVFQV V+
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVFQVNVE 220          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.219e-17
Identity = 59/135 (43.70%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  371 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIRXXXXXXXXXXESVR--RYPTRIDLPEKLYRTDQIKAEMKNGVLXXXXXXXXXXERADVFQVKVD 748
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V+ EQN+LVI+                RY  RI+LP   ++ D+IKAEMKNGVL          ER DVFQV V+
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVFQVNVE 248          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -3
Query:  434 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVI----RXXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVL 751
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++ +E N LVI    +           SV  Y TR+ LP+   + D+IKAE+KNGVL
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVL 208          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  434 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVI-----RXXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVL 751
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+V +E + LVI     +           +   Y TR+ LP+ + + D++KAE+KNGVL
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVL 222          
BLAST of CB290599 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  434 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVFLEQNTLVIR-------XXXXXXXXXXESVRRYPTRIDLPEKLYRTDQIKAEMKNGVL 751
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+V +E + LVI+                  +   Y TR+ LP+   + D++KAE+KNGVL
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVL 162          
The following BLAST results are available for this feature:
BLAST of CB290599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HS235_ARATH5.375e-3054.8923.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ARATH3.852e-2852.5923.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA3.852e-2855.04Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23C_CHERU8.582e-2850.00Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_SOYBN1.515e-2457.00Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS24M_ORYSJ1.568e-2146.5124.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ5.219e-1743.7026.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.680e-1340.1725.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_PETHY4.279e-1134.48Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN9.533e-1135.90Small heat shock protein, chloroplastic (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290599 ID=CB290599; Name=CB290599; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTCCAAGGCCCCTTAGGACTTTATGTAAATTACCC
CTTGATGATTATTTGCTAAATACAGCGGGCATAATTGATAATACTCTTAC
AAAACAAAACGATGCGGGAGAAAATTCCAATTAAAAACGGGTCACCCCAA
CTATTTTCTCTTGGGAAATGAATTTAGAAGGGAAAATCTAAAAGTTTTAC
CCAACAAAACTAAGTAAACTAAAAATTATATGCGAAGTAACACAATTATT
CAAACTTCGAACCCCCCCATTTCAAAACATGTTTGTAACTGTTACCCCAC
ATAAACTACACAAAATTATTCTCCCTCAATATCCGGGACAGAAAAGCTAC
TACTAAAAGCCAACTCTTTAATCAACCTTCACTTGGAACACATCAGCCCT
CTCCTCTTCCTTCACCTTGGGCACCGGCACTTTCAGCACACCATTCTTCA
TCTCAGCCTTGATCTGATCAGTCCTGTAAAGCTTCTCTGGCAAATCAATC
CTGGTGGGGTACCTACGCACGCTCTCTTCGTCCTCTCCTTCTTTTCCGCC
CTCGCCTCTGATCACCAGCGTGTTCTGCTCCAAAAAGACTCTCACGTCTT
CCTTGCCCAGCCCTGGCATGTCGATGCTGAGGTTCAACGCATCATCGGTT
TCTTTAGCATCCCAGCCTCTGCGCAGTCCACCACGGGTGCCGCTGAAAAA
AGGATTCTCCGTCATCTGATCCATGAAGTTCAGGACCTGGCTCAGGCTCC
TTG
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