CB290603

Overview
NameCB290603
Unique NameCB290603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:514..1305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 96/150 (64.00%), Postives = 116/150 (77.33%), Query Frame = -1
Query:  358 TQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAV-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 792
            TQ+YQQEA+KLRRQIR+IQN NRHI+GE+L +LNFKELKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLRA+I E  R              G  VYE  V     SQ Y+RN++PVNLLEPN Q++ Q DQPPLQLV
Sbjct:  102 TQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQ--GTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQ-DQPPLQLV 248          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.041e-43
Identity = 96/150 (64.00%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  358 TQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAV-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 792
            TQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKELKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I E                  G VYE  V     S  Y+RN++ VNLLEPN   + Q DQPPLQLV
Sbjct:  102 TQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQ----GTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQ-DQPPLQLV 246          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.005e-34
Identity = 79/146 (54.11%), Postives = 101/146 (69.18%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYE--PAVSQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 789
            Q+YQQEA+KLR QI  +QN NR++LGE+L+ L+ ++LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YLRA+I E ERA             G   YE  P   Q   RN+L VN L+ N+ Y RQ DQP LQLV
Sbjct:  104 QYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQ-DQPSLQLV 248          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYE--PAVSQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 789
            Q+YQQEA+KLR QI  + N NR+++GEAL+ +  KELKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YLRA+I E ERA               + +E  P   Q   RN+L VN L+ N+ Y RQ DQPP+QLV
Sbjct:  104 QYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQ-DQPPIQLV 248          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.491e-33
Identity = 78/145 (53.79%), Postives = 103/145 (71.03%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAVSQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 789
            QFYQQEA+KLR++I  IQ  NR+++GE+L +L  ++LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YLRA+I ENERA             G   YE A  Q +D RN++ +N L+PN+ Y+RQ DQ  LQLV
Sbjct:  104 QFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMP-----GSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQ-DQTALQLV 242          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32
Identity = 77/146 (52.74%), Postives = 102/146 (69.86%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYE-PAVSQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 789
            Q+YQQEA+KLR QI  +QN NR+ LGE+L+ LN ++L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I E ER+             G   Y+     Q +D RN+L VN L+ N+ Y RQ DQPPLQLV
Sbjct:  104 QYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMP------GSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQ-DQPPLQLV 242          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 68/145 (46.90%), Postives = 100/145 (68.97%), Query Frame = -1
Query:  361 QFYQQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAVSQPYD-RNFLPVNLLEPNHQYARQDDQPPLQL 789
            Q YQQE++KLR+QI  +QN N R I+G++++T++ ++LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYLR+++ ENER                  Y+  V+ PYD RNFL VN+++    YA Q     LQL
Sbjct:   88 QHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERG---QQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQPTTLQL 229          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.306e-29
Identity = 76/154 (49.35%), Postives = 100/154 (64.94%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAV------SQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 789
            Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  LRA+I ENER              GG  YE  +      SQP+D RN+  V  L+P NH Y  A + DQ  LQLV
Sbjct:  104 QYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER-----NNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV 252          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.228e-29
Identity = 74/154 (48.05%), Postives = 100/154 (64.94%), Query Frame = -1
Query:  358 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAV------SQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 789
            Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  LRA+I ENER              GG  YE  +       QP+D RN+  V  L+P NH Y  A ++DQ  LQLV
Sbjct:  104 QYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER-----NNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQTALQLV 252          
BLAST of CB290603 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.926e-27
Identity = 62/140 (44.29%), Postives = 93/140 (66.43%), Query Frame = -1
Query:  376 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIFENERAXXXXXXXXXXXQGGGHVYEPAVSQ-PYD-RNFLPVNLLEPNHQYARQDDQ 789
            Q YQQEA KL++QI  +QN NR ++G+ ++T+N +ELK LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL++++ E+ER             G     E   +   YD RNFL  N++     Y  Q+D+
Sbjct:  130 QHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERG-----LQTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQEDR 264          
The following BLAST results are available for this feature:
BLAST of CB290603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AGL1_ARATH4.183e-4464.00Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL5_ARATH6.041e-4364.00Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_TOBAC3.005e-3454.11Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC3.925e-3452.74Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PANGI1.491e-3353.79Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_PETHY1.262e-3252.74Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MADS3_ORYSJ2.632e-3046.90MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_ARATH1.306e-2949.35Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_BRANA2.228e-2948.05Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MAD58_ORYSJ7.926e-2744.29MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290603 ID=CB290603; Name=CB290603; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTTGAACAGGGCATCCTAGTCGTTCAACGTCATTGA
AAATAATAGATGAAACAAAAATTACAGAGTAGCAAGGATGAATGGAAATG
TAAGCAGGAGATATGAAATGTTTAGGGGCATAATTAATACATGAAGGAAT
CCCTTATTTAACAACATCACACAGTTAAAATTCAAACATTAGCTAGCGAA
AACCACGAGGCCTTCGTTATATGCGGGGGATTTTGAAAAAACTGGCTTTC
ACCTTTTCAATTTACGTACGTACCATACTCTCATCAATCTGATAAATGCA
AGGGAGCAAAAAGGCTTTTGCATATCTCACTGGGAAATGCAGCTATCCTG
CAATTCAAACAAGTTGAAGAGGGGGCTGATCGTCTTGGCGAGCGTACTGG
TGATTGGGTTCCAAGAGGTTTACAGGAAGGAAGTTTCGGTCATAGGGCTG
TGAAACCGCGGGCTCGTACACATGCCCTCCTCCTTGCTGCATCATGCTTT
CTGATTGCCGTTCTTGTTGGGCTCTCTCATTTTCAAATATCCTTGCTCTC
AGGTACATGTTATCATTTTGAAGCTGAATTTCCCTCTTCTCCATGAACTC
GATTTCAGCTAATAACATTTCGTTCTTCTTGGATCTGACTCTGCCGATTC
CCTTCTCAAGTCTTGCCTCAAGGTTCTTGAGCTCCTTAAAGTTTAAAGTG
CTGAGGGCCTCACCCAGAATGTGCCTGTTCAAATTCTGAATCTCCCGGAT
TTGTCTTCGTAGTTTTGTGGCTTCTTGCTGGTAAAACTGAGT
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