CB290606

Overview
NameCB290606
Unique NameCB290606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1438 contig Csv1_Contig1438:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290606 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2 
Query:   77 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 385
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103
[Close]
BLAST of CB290606 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2 
Query:   77 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 385
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KV
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKV 103
[Close]
BLAST of CB290606 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 2 
Query:   77 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 385
            MSR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+ + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101
The following BLAST results are available for this feature:
BLAST of CB290606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ2.497e-2859.22Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI2.497e-2859.22Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH1.327e-2148.54Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290606 ID=CB290606; Name=CB290606; organism=Citrus sinensis; type=EST; length=801bp
GCACTAGGCTTTCTTTGCTTCGCCTCTTTTTCAACTCTTCGTAGGTTAAA
AGCGCATAATTGTTTTTATCGACAAGATGAGCCGGCATCCTACTGTGAAA
TGGGCCCAGAGGACTGACAGGGTCTACATAACCATTGACCTGCCTGATGC
TCAAGATGTGAAGCTTAAATTGGAGCCTGAAGGAAAATTTTTCTTCTCTG
CTACCAGTGGACCAGATAAGATACCCTATGAAGTTGACATTGATTTGTAC
GACAAGGTTGATGTCAATGAGAGCAAAGCTAGTGTTGGCTTGAGAAATAT
CCATTACCTTGTGAAAAAGGCAGAAAACAAATGGTGGAGCAGGCTGCTAA
AGCAGGCGGGAAAACCTCCTGTATTTCTGAAAGTTGATTGGGATAAGTGG
ATTGATGAGGATGAGGAAGGGAAGGATGATAAACCTCCAGCTGATATGGA
CTTCGGGGATCTTGACTTCTCTAAAATGAACATGGGAGGTCTTGATGCTG
AAGCTGCCGGCGGTGATGAAAATGATGAGAGTGACACAGAAGAGGAGAAT
GAGGTGGGAACAACACCAGCAGGGAACAGGGAAGCACCACCACCATCTAC
TTCCAGTGAGCCTGATACCAAGACAGCTTGAAGCTTTCACTTGGATATGT
TTTGAACTCTTAAGGTAGCAACACTTAAGTGTTGGACAACAAACAACAAT
GTTATAATGCTTGCCTGTGGTTATACTTTTTATTTGGGAAGCCCTTGGTT
TTACTGCTCCGTTCTTGTTTGTATTGGATTTGAATACTATCACACTAGAT
A
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