CB290623

Overview
NameCB290623
Unique NameCB290623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:868..1730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.830e-50
Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = -1
Query:  309 NEHEKLSQPSQT---HTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPL-PLASNAEN 761
            N+H +  +P QT   H KD ++KT   S+RSCTKV KQGIALGRSVDLSKF NY+EL+AELD+LFEF+GELMAPKK+W+IVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN  + S + E+  + G+G DAK+ K    P  S+A N
Sbjct:  706 NDHREQGRPFQTNNPHPKDAQTKTN--SSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.450e-48
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = -1
Query:  309 EHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 758
            E+EK  Q +Q  +KDV+SKTQ  STRSCTKV KQG+ALGRSVDLSKF+NYDEL AELD++FEFDGEL++  KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS  N  G         LP+ + ++N
Sbjct:  667 ENEKSGQQAQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.623e-42
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = -1
Query:  381 TKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDS 722
            TK+++SK Q GS+RSC KV KQGIALGRS+DL+KF  YDELIAELDQ+F+F+GEL +  KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN  + +S+ EDS
Sbjct:  700 TKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.968e-42
Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = -1
Query:  309 SQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 734
            SQ  ++++  K+Q  STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  + +S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  708 SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.968e-42
Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = -1
Query:  309 SQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 734
            SQ  ++++  K+Q  STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  + +S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  708 SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30
Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = -1
Query:  309 EKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 752
            EK  +P++   K+V+SK Q  STRS TKVQ QG+ +GR+VDL+    Y+ELI ++++LF+  GEL + +  W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM           +P N   +  +EV+  L   S  +N
Sbjct:  501 EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30
Identity = 68/148 (45.95%), Postives = 92/148 (62.16%), Query Frame = -1
Query:  339 EHEKLSQPSQTHTKDVRS--------KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQ 758
            E ++LSQPS  +  D  +        +TQ    RSCTKV  QG+A+GR+VDL++ + YD+L  +L+++F+  GEL A  K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE  ++   S        P+ GD I     KQ
Sbjct:  515 ESDQLSQPSHANKSDAPAASSEPSPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.410e-29
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = -1
Query:  405 DNQVFNEHEKLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVS 776
            D+ + +   K   P+ +++   + + Q  STRS  KVQ QG A+GR+VDL+   +YDELI EL+++FE +GEL +PK  W IV+TDDEGD MLVGDDPW EFC M +K+FIY  +EV KM S S
Sbjct:  482 DSNISDSTTKCQDPNSSNSP--KEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKS 602          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.677e-28
Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = -1
Query:  384 KLSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS---VSFSSKGED 749
            K  +P    +   + K Q  ++RS TKVQ QGIA+GR+VDL+   +YDELI EL+++FE  G+L+A  K WI+V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM +   +S S + E+
Sbjct:  469 KCQEPITPTSMSEQKKQQ--TSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEE 590          
BLAST of CB290623 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  414 KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 704
            ++Q    RSCTKV  QG A+GR++DL++   Y++L  +L+++F+  GEL+   K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++
Sbjct:  535 ESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
The following BLAST results are available for this feature:
BLAST of CB290623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ARFB_ARATH5.830e-5065.16Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ2.450e-4864.00Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ2.623e-4270.18Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSJ9.968e-4260.00Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI9.968e-4260.00Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFI_ARATH8.753e-3047.97Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ8.753e-3045.95Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFK_ARATH7.410e-2951.61Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFR_ARATH3.677e-2852.00Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFA_ARATH4.803e-2856.70Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290623 ID=CB290623; Name=CB290623; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTGTATAAAACTTAGGCTACTTACATTAAGAGGTTGGAAAAG
AGGGGTAAACAACTATGTACAAAAAGGGATCGTTCGGGAAAGCAAAAGCT
AGAATTGCCATGCTCAAAATAGGGGGTATACATATTGAATGTATTATATG
AGTCGGACACCATATACCATGCCCAAAATTGGATAGTCATGCCGTCTACG
AGGAGGATTGACATCCATCTATTAGTTCATAATCCAAAATAGAATGCCCT
GAATATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCATCAAAACCAC
ACCTAAAAATTCTCTGCATTGGATGCTAAAGGAAGTGGCTGTTTCACTTC
TTTTGCATCAATGCCGTCCCCATTCATTGGACTATCCTCACCCTTCGAGC
TAAAAGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGTGTAGATGAAA
ATTTTGCGTACCATACCACAAAACTCCTGCCATGGATCATCTCCAACAAG
CATCATGTCACCCTCATCATCAGTATATACAATAATCCAATTTTTCTTGG
GAGCCATTAATTCACCATCAAATTCAAATAACTGATCCAGTTCGGCAATC
AATTCGTCATAGTTGTTGAACTTAGAAAGATCCACAGACCTACCAAGTGC
AATTCCCTGCTTTTGAACCTTAGTACAACTCCTAGTCGAACCACACTGTG
TTTTGCTACGAACATCCTTAGTGTGGGTCTGAGAAGGCTGGGACAGTTTC
TCGTGCTCATTGAAAACTTGATTATCATCTGCCAATTTTGAGCTTTTAGA
ATGGTCTGACTTTTGATCTGATTCAAATGCACGAAATTGTTGATCTAAGT
TTCCAGCCGGGTC
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