CB290630

Overview
NameCB290630
Unique NameCB290630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11971 contig Csv1_Contig11971:25..820. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.168e-94
Identity = 177/223 (79.37%), Postives = 190/223 (85.20%), Query Frame = 2
Query:  128 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            SP++  RASPYG+LL+R +EY                     GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   35 SPSSKSRASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 257          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.795e-94
Identity = 181/229 (79.04%), Postives = 194/229 (84.72%), Query Frame = 2
Query:  128 SPAATR------RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            SPAA R      R SP G+L +R + Y               +   K GGGKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   21 SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 248          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 9.885e-94
Identity = 176/217 (81.11%), Postives = 188/217 (86.64%), Query Frame = 2
Query:  146 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 247          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.298e-89
Identity = 173/223 (77.58%), Postives = 188/223 (84.30%), Query Frame = 2
Query:  137 ATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            A+ RASP G LL+R  +Y               S   K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV+D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   37 ASSRASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 255          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.284e-82
Identity = 158/225 (70.22%), Postives = 182/225 (80.89%), Query Frame = 2
Query:  128 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 251          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.284e-82
Identity = 158/225 (70.22%), Postives = 182/225 (80.89%), Query Frame = 2
Query:  128 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 251          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.680e-82
Identity = 158/227 (69.60%), Postives = 181/227 (79.74%), Query Frame = 2
Query:  122 VFSPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            + SP     A+P G LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   32 LLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 254          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.597e-81
Identity = 148/181 (81.77%), Postives = 165/181 (91.16%), Query Frame = 2
Query:  254 GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            G G ITDE TG GAIGQVCQ+IGAVVDV+F+EGLPPI+TALEV+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP FV+QATEQQILVTGIKVVDLLAPYQ+GGKIGLFGG  VGKTVLIMELINNVAKA
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGGKIGLFGGDWVGKTVLIMELINNVAKA 246          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.437e-68
Identity = 130/168 (77.38%), Postives = 146/168 (86.90%), Query Frame = 2
Query:  293 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   59 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 226          
BLAST of CB290630 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 4.182e-68
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 2
Query:  293 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 796
            A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct:   59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 226          
The following BLAST results are available for this feature:
BLAST of CB290630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR1.168e-9479.37ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE5.795e-9479.04ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ9.885e-9481.11ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL4.298e-8977.58ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBN_ARATH2.284e-8270.22ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH2.284e-8270.22ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH8.680e-8269.60ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBM_DAUCA9.597e-8181.77ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPB_RAT1.437e-6877.38ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE4.182e-6876.79ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290630 ID=CB290630; Name=CB290630; organism=Citrus sinensis; type=EST; length=798bp
GACTATTCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTA
GACTCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAA
TCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGC
GTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAG
CAGCCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAA
GGCGGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGG
TCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGG
GGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGG
TTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTAT
TGCTATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATA
CTGGCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATT
ATGAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGA
ACATTACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAA
CTGAACAACAGATTCTAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCT
CCATACCAAAGAGGAGGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGG
AAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCA
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