CB290640 | Citrus Genome Database

Overview


Name	CB290640
Unique Name	CB290640
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	576

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2453	contig	Csv1_Contig2453:161..736.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   35 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 100/130 (76.92%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 100/130 (76.92%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   37 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 100/130 (76.92%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 100/130 (76.92%), Postives = 101/130 (77.69%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   35 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 100/130 (76.92%), Postives = 100/130 (76.92%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of CB290640 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 100/130 (76.92%), Postives = 100/130 (76.92%), Query Frame = 1

Query:    1 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 390
            KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   36 KSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

The following BLAST results are available for this feature:

BLAST of CB290640 vs. ExPASy Swiss-Prot

BLAST of CB290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
VATL_PHAAU	4.214e-46	77.69	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_MESCR	4.214e-46	77.69	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_KALDA	4.214e-46	77.69	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_BETVU	4.214e-46	77.69	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_GOSHI	1.226e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL4_ARATH	1.226e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit c4...	[more]
VATL2_ARATH	1.226e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit c2...	[more]
VATL1_ARATH	1.226e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit c1...	[more]
VATL_ORYSJ	1.601e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_ORYSI	1.601e-45	76.92	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_01cg01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290640 ID=CB290640; Name=CB290640; organism=Citrus sinensis; type=EST; length=576bp
AAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGCCTGAGCTGGT
GATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATG
GTTTGATTATTGCTGTTATTATCAGTACTGGGATTAACCCCAAGGCCAAG
TCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCTGGTTTGGCTTG
TGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATCGTTGGTGACG
CAGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATC
CTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCCTTATTGTTGG
TATCATCTTGTCTTCACGTGCGGGTCAGTCCAGAGCAGATTAAGAAGGGA
ATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCTGGGGGAGCGAG
ATTTTTTTTAAAATTATTCTCAGGTTCAAGTGGATAGCACTTGCTCAAAC
TTTCTTGTGGAAGTTGCCGTTCTGCGAGTCATTTGTATGTTACTCCATGT
TTCTGGTAGTAGGATTGAGTTTCTTC