CB290654

Overview
NameCB290654
Unique NameCB290654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:45..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.972e-55
Identity = 103/172 (59.88%), Postives = 134/172 (77.91%), Query Frame = 2
Query:   98 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLINKFAGKH 613
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  AKG DF + MSNVETWVSAALTDE TC DGF GK ++GK+K SVRAQVV VA VTSNAL+L+N FA KH
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 50/158 (31.65%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 592
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V  + SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 50/158 (31.65%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 592
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V  + SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 47/157 (29.94%), Postives = 92/157 (58.60%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 592
            +RSSC ST YP LC+ ++         S + +   +++++++  +     V KL +K + L  RE  A+ DCL+ + +T+D L ++V++L H+   K +    H  +++T +S+A+T++ TC DGF     + +V+ ++    ++V H+ SNAL++I
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HLYPTK-KTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 49/168 (29.17%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   92 VTAAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 592
            +T         ++S C ST YP LC  +++A       S +++   +L+++    +     V KL  K + L  RE  A+ DCL+ + +T+D L  +V++L+   + K      H  +++T +S+A+T++ TC DGF     + KV+ ++    V+V H+ SNAL++I
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKS--LRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.798e-14
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFG---GKALEGKVKSSVRAQVVNVAHVTSNALSLINKFAG 607
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R  +AI  C    GD +DRL+ S+  L  +           +SNVETW+SAALTD++TC D  G     A  G ++  +   + N     SN+L+++ K  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA--SVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQ-EIETAMRNSTEFASNSLAIVTKILG 234          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 46/159 (28.93%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRN-LKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 592
            ++S+C +T +P LC  ++   +   ++   Q  V  LS++++     +++  V +L K R  L  RE  A+ DCL+ M +T+D L  +V++L      K      H+ +++T +S+A+T++ TC DGF     + KV+  +     +V  + SNAL++I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKS--LKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQ-QSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLIN 595
            I  +C+ T +P LCV SL  +  S+   S + L    ++++L     A      L  F ++  R   A   C++ + D+VD LS+++  +     AK QD       V TW+SAALT+ +TCT+GF G   +G VK  + A + N++ + SN L++ +
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVS-SSAKPQD-------VTTWLSAALTNHDTCTEGFDG-VDDGGVKDHMTAALQNLSELVSNCLAIFS 234          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 45/166 (27.11%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  116 TRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGG-KALEGKVKSSVRAQVVNVAHVTSNALSLINKFAGK 610
            T+ I  +C  + YP LC+ +L  +  S+     +L   + + +L +   A  + +    +  +  R   A   CL+ + D+VD L++++  +  +   +        S+V TW+S+A+T+ +TCTDGF   +   G+VK  V   V +++ + SN L++   FAGK
Sbjct:   72 TQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKAL-YTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESH------SDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI---FAGK 227          
BLAST of CB290654 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 44/165 (26.67%), Postives = 77/165 (46.67%), Query Frame = 2
Query:  125 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFG------GKALEGKVKSSVRAQVVNVAHVTSNALSLINKF 601
            +R+ C  T YPA CV S+S    S    P  L   +L V ++   S      KL +  +   R   +++ C D   D +D ++ ++  +  +G  K       +  ++TW+SAA+TD +TC D          +     +   +++ +VN    TSN+L++I KF
Sbjct:  271 LRNVCSVTRYPASCVSSISKLPSSNTTDPEALFRLSLQVVINELNSIAGLPKKLAEETD-DERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSAMVNSRKFTSNSLAIIAKF 434          
The following BLAST results are available for this feature:
BLAST of CB290654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
21KD_DAUCA6.972e-5559.8821 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI2.193e-1631.65Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.193e-1631.65Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH1.421e-1529.94Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH1.421e-1529.17Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_PHAVU7.798e-1431.71Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PMEU1_SOLLC5.588e-1228.93Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME34_ARATH5.588e-1231.65Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH2.124e-1127.11Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME26_ARATH3.622e-1126.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290654 ID=CB290654; Name=CB290654; organism=Citrus sinensis; type=EST; length=800bp
GCAAGCAGAAAGCTTTTAATTAGTTTCTGAAAACATGGCAAAAACAGGCT
GTCTTTTGCTATTGCTCTCTCTCCTCTACATTATAAGCTTGGTCACAGCT
GCCGGGATTGCTGACACAAGATTTATCAGAAGTTCTTGCAAATCCACAAC
TTATCCAGCGCTGTGCGTGCAGTCTCTCTCAGCTTATGCCCCATCAATTC
AACAAAGCCCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGAGCCTCTCC
AGGGCCCAATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAGTTCAGGAA
CCTGAAGCACAGAGAGTATGAGGCGATTGCCGACTGCTTGGATGAGATGG
GTGACACTGTGGACCGGCTCAGCAAGTCGGTTCAGGAGCTGAACCACATG
GGTCAGGCCAAGGGTCAGGACTTTCTGTGGCACATGAGCAACGTTGAGAC
ATGGGTTAGTGCTGCTTTGACTGATGAGAACACTTGTACTGATGGGTTCG
GTGGCAAGGCCTTGGAGGGTAAGGTTAAGTCCTCTGTTAGGGCTCAGGTT
GTTAATGTTGCTCATGTCACTAGCAATGCCCTTTCACTGATCAATAAGTT
TGCTGGGAAACACTGAGCCGTAGTTAACCATATGGCTGTGTGAATGTTTT
GCGAGAGTTTGTGTCTCTTTTTATCTTTGGTTTAGTTTTAATGTACAAAT
TAATCATCAGTTATAAGTGAGTGTTAATTTTGAGCATATCTATAAAAATG
AGCTTATGTGAATGAGCAAAGATTCTTGTCTTTTAAAAAAAAAAAAAAAA
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