CB290658

Overview
NameCB290658
Unique NameCB290658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:188..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.721e-94
Identity = 169/241 (70.12%), Postives = 199/241 (82.57%), Query Frame = 1
Query:  139 MAQIQVQHQ------AQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            MAQ+Q+Q Q      A ++     + GA+  QF  TSLYVGDLDFNVTDSQL+D F Q+G V++VRVCRDL TRRSLGYGYVN+ NP DAARA+  LN+ PL  K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNLAESTTD+DLK  FGEYG I
Sbjct:    1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 241          

HSP 2 Score: 146.747 bits (369), Expect = 1.487e-34
Identity = 81/221 (36.65%), Postives = 126/221 (57.01%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++    L+D FS  G ++S +V  D S+ +S GYG+V YAN   A +A++ LN   LN+K + +        RD +  K+   N+++KNL +S     L + F  +G I S  +  DG G+SKGFGFV FEN + A  A++ LNG   +DK+ +VG   +K ERET             A K + +N++VKNL  S +DE LK+ F  +GT+
Sbjct:  125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 344          

HSP 3 Score: 109.768 bits (273), Expect = 2.015e-23
Identity = 68/206 (33.01%), Postives = 112/206 (54.37%), Query Frame = 1
Query:  202 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 771
            ++ N+   T++YV +L  + TD  L + F + G++ S  V +D    +S G+G+VN+ N  DAARA++ LN    ++K   +      S R+  +R            K  + N+++KNLD SI  + L + FS FG + S K+  D +G SKG GFV F   E A  A+ +L+G +I  K ++V    RK++R  V ++ +F+ V
Sbjct:  207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR-VRLQAQFSQV 410          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.987e-71
Identity = 141/225 (62.67%), Postives = 178/225 (79.11%), Query Frame = 1
Query:  190 VAAGASGNQFLTT----SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            VAA A+  + L T    SLYVGDLD +V +S L DLF+QV  V ++RVCRDL T RSLGY YVN+ANP DA+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG ILSCK+A D  G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R   E+ A+ + F NV+VKNL +  TD++LKK FG+YG I
Sbjct:   29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDI 251          

HSP 2 Score: 131.339 bits (329), Expect = 6.467e-30
Identity = 75/224 (33.48%), Postives = 124/224 (55.36%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LY+ FS  G +LS +V  D+   RS GYG+V +     A  A+D LN   LN+K + + +  R     +S +G      N+++KNL K I    L  TF  +G+I S  +  D SG S+ FGFV F + E+A  A++K+NG+ + +  ++VG   +K +RE   ++ KF             +N+++KNL +S  DE LK+ F EYG +
Sbjct:  133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE-ELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNV 354          

HSP 3 Score: 104.76 bits (260), Expect = 6.482e-22
Identity = 61/187 (32.62%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            T++YV +L   +TD +L   F + G + S  V +D S   S  +G+VN+ +P  AA A++ +N   L    + +      S R+  +R            K    N+++KNLD S++ + L + FS +GN+ SCK+  +  G S+GFGFV + N E A  A+ ++NG +I  K ++V    RK+ER+
Sbjct:  225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.860e-69
Identity = 137/236 (58.05%), Postives = 174/236 (73.73%), Query Frame = 1
Query:  142 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            AQ  VQ    +  P+ V      +    +SLY GDLD  VT++ L+DLF  V  V+SVRVCRD   RRSLGY Y+N++NP DA RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QE  R+      +F NV+VKNL +   +++L+K FG++G I
Sbjct:   23 AQTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255          

HSP 2 Score: 133.65 bits (335), Expect = 1.303e-30
Identity = 79/224 (35.27%), Postives = 121/224 (54.02%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS------IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  L++ FS  G +LS +V  D+ T RS GYG+V +     A  A+D LN   +N+K       IR     RD +       N+++KNL K I    L  TF  FG I S  +  D SG S+ FGFV FE  E+A +A++K+NG+ + D  ++VG   +K ERE   ++ KF              N+++KNL +S  DE LK+ F EYG +
Sbjct:  137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNV 358          

HSP 3 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 58/186 (31.18%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  226 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 735
            T++YV +L   + + +L   F + G + S  V RD S   S  +G+VN+     AA A++ +N   L +  + +      S R+  +R            KS   N+++KNLD S+D + L + FS +GN+ S K+  +  G S+GFGFV + N E A  A+ ++NG +I  K +++    RK++R
Sbjct:  229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.411e-69
Identity = 125/219 (57.08%), Postives = 167/219 (76.26%), Query Frame = 1
Query:  193 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            +A  S NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+ +  TDE+ +K F ++G I
Sbjct:   41 SATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI 259          

HSP 2 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/223 (31.84%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GFGFV F   +SAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ F  +GTI
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI 362          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.067e-69
Identity = 128/213 (60.09%), Postives = 163/213 (76.53%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK++FG+YG
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG 215          

HSP 2 Score: 132.88 bits (333), Expect = 2.223e-30
Identity = 79/224 (35.27%), Postives = 123/224 (54.91%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA+D +N   LN++ + +        R+  +  R     N++IKN  + +D + L + F  +G  LS K+ TD  G+S+GFGFV FE  E AQ A+D +NG  +N K +FVG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +G+I
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSI 320          

HSP 3 Score: 105.531 bits (262), Expect = 3.800e-22
Identity = 66/197 (33.50%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L + F Q G  LSV+V  D    +S G+G+V++    DA +A+D +N   LN K+I +  + +                 D   R  G  N+++KNLD  ID + L   F+ FG+I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 2.056e-68
Identity = 128/207 (61.84%), Postives = 161/207 (77.78%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-TVAIKTK-FNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            SLYVGDL  +V +S L+D FS  G VLS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  + NK IRIM+S RDPS+R+SG GN+FIKNLD++ID+KA++DTFS+FGNILSCK+ATD  G SKG+GFV FE +E+A  +IDK+NGML+N K+V+VG F+ ++ERE  +  K K F NV+VKN  E   DE LK+FF  YG I
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI 209          

HSP 2 Score: 107.457 bits (267), Expect = 1.000e-22
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND-KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  +YD FS  G +LS +V  D     S GYG+V++     A  ++D +N   LN K + +  +  R    ++ G       N+++KN  +  D + L + F  +G I S K+ +   G+SKGFGFV FE  E+A+ A+  LNG  + + K ++V    +K ER+   +K KF              N++VKNL ++  D+ L+  F  YG I
Sbjct:   91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ-ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI 313          

HSP 3 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 57/190 (30.00%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  220 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN----------------KSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            L T++YV +   +  D +L + F   G++ S +V       +S G+G+V +     A  A+  LN   +                  + ++  +        +S  G N+++KNLD +ID   L   FS +GNI S K+ TD  G+SKGFGFV F     A  A+ +LNG ++  K ++V    RK+ER+
Sbjct:  181 LFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERK 369          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.508e-68
Identity = 123/215 (57.21%), Postives = 165/215 (76.74%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            S +Q  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+ +  TDE+ +K F ++G I
Sbjct:   45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI 259          

HSP 2 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/223 (31.84%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GFGFV F   +SAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ F  +GTI
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI 362          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 3.508e-68
Identity = 126/213 (59.15%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  +   DE LK+ FG+YG
Sbjct:    4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYG 215          

HSP 2 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 80/224 (35.71%), Postives = 124/224 (55.36%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA+D +N   LN++ + +        R+  +  R     N++IKN    ++ + L + F  +G  LS K+ TD +G+SKGFGFV FE  E AQ A+D++NG  +N K +FVG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTI 320          

HSP 3 Score: 104.76 bits (260), Expect = 6.482e-22
Identity = 64/197 (32.49%), Postives = 106/197 (53.81%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L ++F + G  LSV+V  D    +S G+G+V++    DA +A+D +N   +N KS+ +  + +                 D   R  G  N+++KNLD  ID + L   F  FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.021e-67
Identity = 121/215 (56.28%), Postives = 164/215 (76.28%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            + NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+    T+E+ +K F ++G I
Sbjct:   44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI 258          

HSP 2 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 72/223 (32.29%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   NI+IKN+D  +  +     F  FG I S  ++ D  G+S+GFGFV +   ESAQ A+D+++   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L++ FG YGTI
Sbjct:  140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTI 361          
BLAST of CB290658 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.021e-67
Identity = 126/213 (59.15%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  205 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYG 837
            S   +   SLYVGDL  +VT++ LY+ FS  G +LS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG++G
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 215          

HSP 2 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 82/224 (36.61%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  229 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTI 843
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GYG+V++     A RA++ +N   LN++ + +        R+  +  R     N++IKN  + +D + L + F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNL +   DE L+K F  +GTI
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320          

HSP 3 Score: 108.612 bits (270), Expect = 4.489e-23
Identity = 68/197 (34.52%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  199 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 738
            GA   +F  T++Y+ +   ++ D +L +LF + G  LSV+V  D S + S G+G+V++    DA +A+D +N   LN K I +  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  184 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
The following BLAST results are available for this feature:
BLAST of CB290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PABP2_ARATH3.721e-9470.12Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH1.987e-7162.67Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.860e-6958.05Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_NEOFI5.411e-6957.08Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA7.067e-6960.09Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP_DROME2.056e-6861.84Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_ASPFU3.508e-6857.21Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPA_XENLA3.508e-6859.15Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_ASPCL1.021e-6756.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_RAT1.021e-6759.15Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290658 ID=CB290658; Name=CB290658; organism=Citrus sinensis; type=EST; length=845bp
GGTTTTTTCCCCTAGAATTATAGTCATAGAATCAGATTATTTATCCTGTT
ATCTCTCTAGATTTTTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAA
AAGCCAAAAAAAAAAAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATT
CAGGTGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGG
TGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCG
ATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGT
CAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACT
CGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAAGGGCAC
TGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGAATCATG
TATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAACATATT
TATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACGATACAT
TTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGATGGTTCT
GGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGC
TCAAAATGCTATTGATAAGTTAAATGGCATGCTTATTAATGATAAACAAG
TGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAACTGTAGCAATT
AAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGTCCACTAC
AGATGAAGATTTGAAGAAATTTTTTGGTGAGTATGGAACAATTAC
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