CB290661

Overview
NameCB290661
Unique NameCB290661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290661_ssr44 microsatellite CB290661_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:154..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290661 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = -3 
Query:  272 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDFGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 562
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVRED GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of CB290661 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = -3 
Query:  275 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDFGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 562
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E   +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of CB290661 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = -3 
Query:  275 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDFGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 562
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E   +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of CB290661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI6.505e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.046e-2154.81Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI7.495e-2051.92Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cg12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290661 ID=CB290661; Name=CB290661; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTACGCTCTGGGATCCCAGACCGCATAACCCCTCTATATAT
ATATAAAAGTAATTTTGCAATACAGGAATTCTTTACTTTTATTGACAAGT
TAATAGACAAAATCATGGAAATGCACTATTAAAAGTTGTCAATAACAGTT
GATATCAATACAACAGCAAAGACTTAAGAGTGAGTCAAAATTGCTACTGT
AACAACATCACTTAAAAAGTTAAAGCACCGCTAACAGCAAAGGATCTGCT
GCTATGCGCCACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCAACAGCA
TCTCTCGAAGCTCTGCTGGATCAATCTCGACCGCCCGATTCTCCGGCCTG
TAGTACCCAGTGATGGGATCTGGGGCCCAGGCAGAAGAGGCCCCAAAATC
CTCTCTCACCGCAGGCCTCAAATCATTTTTCTCCATGATACCAGTCCGAG
ATATGGTCCCCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCTAATGGAG
AGCGAGATGCCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTTGAAGAG
AGAGCGGGCCATTGTTTTATTTACTTATAGAACTTAATAGATATGAAGAT
AGCTAGCTGGGATGTTTCTGTACAGTGCTACTACAGAAGAAGAAAGATTC
TGCTCCTGCAGTAGCTATAGGCAAAAGCTAGCGGCTCGCCCTCGTG
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