CB290699

Overview
NameCB290699
Unique NameCB290699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290699_ssr23 microsatellite CB290699_ssr23:23..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12851 contig Csv1_Contig12851:20..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.812e-77
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTA 560
            MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA++  ++A
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.396e-76
Identity = 140/175 (80.00%), Postives = 153/175 (87.43%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTAT 563
            MVKYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA++  + A+
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.223e-72
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            MVKYS +P NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.069e-72
Identity = 135/170 (79.41%), Postives = 145/170 (85.29%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 548
            MVKYS+EP NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS             +A+RK
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.766e-71
Identity = 132/170 (77.65%), Postives = 142/170 (83.53%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 548
            MVKYS++P NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS             +A RK
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.406e-57
Identity = 110/152 (72.37%), Postives = 126/152 (82.89%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            M KYS +P+NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.961e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.961e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.562e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.562e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of CB290699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL172_ARATH2.812e-7781.0360S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH1.396e-7680.0060S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU1.223e-7286.8460S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE6.069e-7279.4160S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL172_HORVU1.766e-7177.6560S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA9.406e-5772.3760S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_HUMAN1.961e-5467.7660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA1.961e-5467.7660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT2.562e-5467.7660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE2.562e-5467.7660S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290699 ID=CB290699; Name=CB290699; organism=Citrus sinensis; type=EST; length=785bp
GGAAAAACGCAACGCTGAGAAGAGCAGCAGCAGCAGCCATGGTGAAGTAT
TCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTGA
TCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGAA
AGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCAC
AAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTGC
ACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAAT
CTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGAG
GTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGAA
TCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATTA
ACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAAG
GAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAACC
GAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGACT
TGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAACATACAATTTTG
TTTACAAGATACTTGTTCCTGAAGACTTCTGTTGGTTCAGTATTTAGTTT
TATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAGTGGAATTT
TGATGGTGGGTATGTTGAGGTTGACTTTGCCGCAA
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