CB290708

Overview
NameCB290708
Unique NameCB290708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:96..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290708 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = -1 
Query:  600 RSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 839
            RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   69 RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB290708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.463e-2156.25Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01db02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290708 ID=CB290708; Name=CB290708; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTAGTTCGAACACTGGGACAAGACTTTATTACCCAGCA
AACATAACTGTACATTGGACAAGACTGGATAAAAGGTTAATTTGAAAGCA
AACACCTAAGAAACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGGTGC
TACATTTCTCACAAGCATACACTATTTCCATTCCAGTTGATGATTTTTTG
CTACACTCATTTTGTTATTCACATGGACCCTCTTGCAGCTTGCATCCCCA
CAAACTTTTTTTCCCCCAAACCGCGGATTTTTAACTGTTGGCTAATATCT
CAAGTGGAGAAGAAAGATCTTCTAACCTTCTACTCTGTGGCTGCAAAAAC
TGCTGGCCCTTCCACCTTAAATGTAGCACCCCAGATCTCTTCTTCCGCAG
CAGGAACCGCAGTGATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGTCCT
CCAACTGCTGTTGAGAAGAAACAACCTTGAGGGAAAGAAGCAAGTGACTT
GCCGCAAGCACCTTTGAGCAAGTCAGCATCATCAGCAAAGGCAACATGTC
CATCAGCAGTGATTCCCCAATAAAGAGGAACCTTACCAAATTGGTCAGAA
GCCACAAACAAGGTGGAGGTGGACTTGTCGTAGACAATGAAGGCAAAGTA
CCCACTAAGGTGGCCAACGACATGGTTCGGTGGGTAAGGGGCCCGATCAC
GCAGAGCCTTGTATGCCTCAATCACCAAGATCACTTCATTTGCCGACTTA
GCTAGTCCATATTGCTGCCTCAGGCTTCCCAAGTTATCAAGTGCTCCCTC
AAACAAGCAAAAGATCTCATCTTTCACAGCAAATGATCTTTGCCG
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