CB290764

Overview
NameCB290764
Unique NameCB290764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:492..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.019e-61
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = -3
Query:  369 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 824
            VGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  294 VGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.169e-60
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  348 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 824
            VGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  302 VGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.296e-51
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  345 GYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 821
            GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  184 GYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.529e-49
Identity = 89/157 (56.69%), Postives = 103/157 (65.61%), Query Frame = -3
Query:  372 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 824
            VGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  307 VGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.671e-40
Identity = 77/158 (48.73%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  369 VGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 824
            VGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  322 VGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  675 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 824
            VGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  310 VGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = -3
Query:  675 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 824
            VGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  265 VGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = -3
Query:  675 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 824
            VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  309 VGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.389e-13
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  675 VGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 824
            VGYGTEN  D+WIVKNSWG +WGE GYIR ERN+     GKCGI   ASY
Sbjct:  166 VGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASY 214          
BLAST of CB290764 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = -3
Query:  675 VGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 824
            VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  294 VGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
The following BLAST results are available for this feature:
BLAST of CB290764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ORYA_ORYSJ4.019e-6165.13Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.169e-6061.01Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC1.296e-5155.35Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ3.529e-4956.69Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ6.671e-4048.73Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH1.224e-1776.00Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA6.075e-1778.00Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH1.401e-1370.00Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPGP2_ZINOF2.389e-1368.00Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CYSP_HEMSP4.075e-1368.63Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290764 ID=CB290764; Name=CB290764; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTCAGAAGAATCGTTAAATATCAATTCATACCCGTCTCC
GCTGAATGATGCCAGGGATTTGGTGGAGGACATCGTAAATAGATAACAAC
AATTTGTTTGTGCATTGTTCGGATTCAACGCAGATAGATAACTTACAACG
CTATATACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTG
CCGGTACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGG
GGAGAAACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTC
CACTGCTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTG
ATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCA
CTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTA
CAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGT
GGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACT
CAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCA
CACACAGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGG
AGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCAC
ACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCA
CCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGC
TCCATTTTCTGTGCCATATCCAACAG
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