CB290780

Overview
NameCB290780
Unique NameCB290780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5955 contig Csv1_Contig5955:221..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.205e-34
Identity = 79/110 (71.82%), Postives = 79/110 (71.82%), Query Frame = 3
Query:   84 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 413
            M SNRG GGI           HIVAAARNAKMARL                QVEREFQRKLAES GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQM LKHVTTVKN
Sbjct:    1 MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.748e-24
Identity = 62/110 (56.36%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   84 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 413
            M SNRG G I           HIV AAR AKMARL                Q E++FQRKL E+SGDSGANVKRLEQET+ KI  LK  A +I  DVV+MLLKHVTTVKN
Sbjct:    1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 59/110 (53.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:   84 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 413
            MAS+ G  GI           HIV  AR AK ARL                 +E EFQRKL ++SGDSGANVKRLEQET+ KI HLK  AE++  DVVQMLL+HVTTVKN
Sbjct:    1 MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 57/111 (51.35%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   84 MASNRG-HGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 413
            M SNRG   GI           HIV AAR  K AR+                 +E EFQR + ++SGDSGANVKRLEQET  KI HLK  AE I +DVVQMLL+ VTTVKN
Sbjct:    1 MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  150 IVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 413
            IV AAR AKM RL                  E+ FQRKL  +SGDSGANVKRLEQET+ KI  LK  A +I  DVV MLLK+VTTV N
Sbjct:   19 IVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
BLAST of CB290780 vs. ExPASy Swiss-Prot
Match: VATG3_ARATH (V-type proton ATPase subunit G3 OS=Arabidopsis thaliana GN=VHA-G3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 3
Query:   84 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTT 404
            M S RG GGI            IV+AAR AK+AR+                ++E E+Q ++  S  D  A+ KRL+ ET+V+I +LK  + K+  D+V+ML+K+VTT
Sbjct:    1 MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQV--SGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105          
The following BLAST results are available for this feature:
BLAST of CB290780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VATG_CITLI3.205e-3471.82V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VAGT1_ARATH8.748e-2456.36V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG1_TOBAC1.650e-2253.64V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VATG2_TOBAC7.664e-2051.35V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH3.936e-1655.68V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
VATG3_ARATH3.812e-1137.38V-type proton ATPase subunit G3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01de06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290780 ID=CB290780; Name=CB290780; organism=Citrus sinensis; type=EST; length=616bp
GCACGTGGGGCGAAGAAAAGGTCTCTGTTGTTCCCCCGCTTTCTCACTGA
ATCTTGGCCGCAAGCAAGTCTCAACAGGAAAGCATGGCATCTAATCGGGG
TCATGGTGGAATTCAGCAATTGCTGGCTGCTGAACAAGAAGCTCAACACA
TTGTTGCCGCTGCCAGAAATGCAAAAATGGCTAGACTGAGGCAAGCCAAA
GAAGAGGCTGAAAGGGAGATTGCTGAACATCGAGCTCAGGTGGAGCGTGA
GTTCCAGAGGAAACTTGCAGAGAGTAGTGGAGATTCAGGTGCGAATGTGA
AGAGGCTTGAACAAGAAACAGAGGTAAAAATTCATCATCTGAAGGCTGGG
GCTGAGAAAATTCAATATGATGTTGTCCAAATGCTCCTCAAGCATGTTAC
AACTGTGAAGAATTAAGCTCTGATGTTATCTTTTCCTGGTTCGTTGTGAA
TCCTAGACTTCATGTGAGTTGTAATTAGGATCCATGCATTGGTTGTTTCA
TCGTTTGGTTTATTTTGGATTGTAATTTATCAAAGTTGGAAATGAGTTCG
TTGTACTTCAAATTCTGCTCATTGTTAGAATAAATAACCATAAACGTATC
AAAAAAAAAAAAAAAA
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