CB290795

Overview
NameCB290795
Unique NameCB290795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290795_ssr546 microsatellite CB290795_ssr546:546..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13856 contig Csv1_Contig13856:20..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.313e-89
Identity = 167/232 (71.98%), Postives = 180/232 (77.59%), Query Frame = 1
Query:   49 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                            DDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.637e-86
Identity = 163/233 (69.96%), Postives = 177/233 (75.97%), Query Frame = 1
Query:   46 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 159/226 (70.35%), Postives = 176/226 (77.88%), Query Frame = 1
Query:   67 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                             +DQK+VDA LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.457e-84
Identity = 161/233 (69.10%), Postives = 175/233 (75.11%), Query Frame = 1
Query:   46 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.572e-41
Identity = 117/288 (40.62%), Postives = 147/288 (51.04%), Query Frame = 1
Query:    7 GSFTEAQQKRVASMA---------PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            GS   A + R A +A         PK+ KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   20 GSDAAASRPRAAKVAKKVHPKGKKPKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.730e-41
Identity = 107/262 (40.84%), Postives = 141/262 (53.82%), Query Frame = 1
Query:   55 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.483e-41
Identity = 110/273 (40.29%), Postives = 144/273 (52.75%), Query Frame = 1
Query:   22 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            A++  V +   K+G+P  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.276e-40
Identity = 107/263 (40.68%), Postives = 140/263 (53.23%), Query Frame = 1
Query:   52 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            PK+GKP  SRNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+A+P L+ YL + F+L  G+ PH+LVF
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKI-DQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.276e-40
Identity = 107/262 (40.84%), Postives = 141/262 (53.82%), Query Frame = 1
Query:   55 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH++VF
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
BLAST of CB290795 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 164.081 bits (414), Expect = 8.274e-40
Identity = 112/273 (41.03%), Postives = 144/273 (52.75%), Query Frame = 1
Query:   31 KRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 744
            K+ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   37 KKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
The following BLAST results are available for this feature:
BLAST of CB290795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR3.313e-8971.9860S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH7.637e-8669.9660S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.701e-8570.3560S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL62_ARATH2.457e-8469.1060S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_MOUSE2.572e-4140.6360S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_PIG5.730e-4140.8460S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_CHILA7.483e-4140.2960S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_HUMAN1.276e-4040.6860S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_BOVIN1.276e-4040.8460S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_RAT8.274e-4041.0360S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290795 ID=CB290795; Name=CB290795; organism=Citrus sinensis; type=EST; length=800bp
GCACGTGGCTCATTCACAGAGGCACAGCAGAAGCGGGTAGCATCAATGGC
GCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGAGCTGATCCGAG
GAATTGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGAGGGGTCTCTGG
GCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCACGACCCCAAGCC
CAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGTTTTACCCCGCCGATG
ACGTCAAGAAACCACTCGTCAACAAGCGCAAGCCTAAACCCACCAAACTT
AGAGCAAGCATCACCCCAGGGACAGTGCTGATTATACTAGCTGGAAGGTT
CAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATCTGGGTTGCTTC
TAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCTTTACGACGTGTGAAC
CAGTCTTACGTGATTGGAACTTCTACCAAAGTTGATATCTCCGGAGTGAA
TGTGGATAAGTTTGATGATAAGTATTTTGCCAAGGAAGTCGAGAGGAAGA
AGAAGAAAGGAGAGAATGAGTTCTTTGAGTCAGAGAAAGAGGAGAAGAAG
TCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTCTGTTGATGCACCATT
GATCAAGGCCATTGAAGCTGTTCCAGACTTGAAGGCTTACCTTGGTGCTA
GGTTTTCCCTCAGGGCCGGCATGAAACCTCATGAACTTGTCTTCTGAAAA
CATGTTGAAACAATTTAGGATTGCTTTGCTTTTTCCTACTTGTTATGTTT
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