CB290808

Overview
NameCB290808
Unique NameCB290808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2547 contig Csv1_Contig2547:68..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.357e-72
Identity = 131/154 (85.06%), Postives = 143/154 (92.86%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            KSIKKEACWTISNITAGNR QIQ VIEA II PLV+LLQ+AEFEIKKEAAWAISNATSGG+H QI+FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK+GEADK++G   G+NVYAQ+IDE +GL+KIENLQ+HDN EIYEKAVKILE YW
Sbjct:  342 KSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 8.795e-72
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = -3
Query:  255 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWAXXXXXXXXXXXXXXXXXXXXXXFATNQPNIPPGGFKFG 833
            KSIKKEACWTISNITAGNR QIQAVI ANII PLVHLLQ AEF+IKKEAAWAISNATSGG+H QI++LV+QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA+K +G  + +N YAQMID+ +GL+KIENLQ+HDN EIYEKAVK+LE YW                       F   QPN+P GGF FG
Sbjct:  347 KSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGD-VNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW----LEEEDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 4.826e-70
Identity = 131/192 (68.23%), Postives = 148/192 (77.08%), Query Frame = -3
Query:  258 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWAXXXXXXXXXXXXXXXXXXXXXXFATNQPNIPPGGFKF 833
            KSIKKEACWTISNITAGN+ QIQ V+EAN+I PLV LLQ+AEF+IKKEAAWAISNATSGGSH QI++LV QGCIKPLCDLLVCPDPRI+TVCLEGLENILKVGEA+K +G    +N YAQ+ID+ +GL+KIENLQ+HDNNEIYEKAVKILE YW                          NQ  +P GGF F
Sbjct:  341 KSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGG-NQAPVPSGGFNF 531          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.898e-66
Identity = 124/154 (80.52%), Postives = 139/154 (90.26%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            KSIKKEACWTISNITAGN+ QIQAVI A II PLV+LLQ AEF+IKKEAAWAISNATSGGSH QI++LVS+GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE DK +   + +NV++QMIDE +GL+KIENLQ+HDNNEIYEKAVKILE YW
Sbjct:  341 KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD-VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.350e-63
Identity = 122/192 (63.54%), Postives = 140/192 (72.92%), Query Frame = -3
Query:  258 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWAXXXXXXXXXXXXXXXXXXXXXXFATNQPNIPPGGFKF 833
            KSIKKEACWTISNITAGN  QIQAVI+A II  LV +LQ AEFE+KKEAAW ISNATSGG+H QI+F+VSQGCIKPLCDLL CPD ++VTVCLE LENIL VGEA+K +G     N+YAQMIDE +GL+KIENLQ+HDNN+IY+KAVKILE +W                             N+PPG F F
Sbjct:  344 KSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQF-----GSTNVPPGQFNF 530          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA7_MOUSE (Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.696e-49
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SI+KEACWTISNITAGNRAQIQAVI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LVS GCIKPLCDLL   D +IV V L GLENIL++GE + +    +G+N Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKRS-GSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA7_PONAB (Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SI+KEACWTISNITAGNRAQIQAVI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LVS GCIKPLCDLL   D +IV V L GLENIL++GE + +    +G+N Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRS-GSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA7_HUMAN (Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SI+KEACWTISNITAGNRAQIQAVI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LVS GCIKPLCDLL   D +IV V L GLENIL++GE + +    +G+N Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRS-GSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SI+KEACWTISNITAGNRAQIQAVI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGG+ +QI++LVS GCIKPLCDLL   D +IV V L GLENIL++GE + +    +G+N Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  350 ESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRS-GSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_PONAB (Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.046e-48
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  372 KSIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 833
            +SIKKEACWTISNITAGNRAQIQ VI+ANI   L+ +LQ AEF  +KEAAWAI+NATSGGS +QI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE + +     GIN Y  +I+E  GLDKIE LQ+H+N EIY+KA  ++E Y+
Sbjct:  352 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 504          
The following BLAST results are available for this feature:
BLAST of CB290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA_SOLLC1.357e-7285.06Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1B_ORYSJ8.795e-7270.98Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA1_ARATH4.826e-7068.23Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ1.898e-6680.52Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA2_ARATH3.350e-6363.54Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA7_MOUSE4.696e-4962.34Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 ... [more]
IMA7_PONAB8.010e-4962.34Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 ... [more]
IMA7_HUMAN8.010e-4962.34Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 ... [more]
IMA7_BOVIN8.010e-4962.34Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]
IMA1_PONAB1.046e-4862.99Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290808 ID=CB290808; Name=CB290808; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTATCCATGTAAGATTTTTCCTATGAACCTTTAAATT
GAGAAATACAATTCAAGTTGAAAACTGCAAGCCATCTCGAAAAGTTTTAA
CATATTCCATGAAAGTAAAAAGCCTATGTGCCAGACCAAAAATCCTGACC
CTTGGCGACAACGACAAGACAATATAGAAAATTCCAAAATTCACTGCAAT
GGGAGAAACAATGCCCTATAAAGCTAGTAAAGATATTCTCAAACTACTAC
TTCAACCAAATTTGAAGCCACCAGGTGGAATGTTGGGCTGGTTGGTTGCA
AAACCAAAACCCTGCTGCTGATTTCCAATACCACCTTCTTGGATAAGCTG
CTCTTCCTCCTCTTCCTCAGCCCAATATCTCTCCAAAATCTTCACAGCCT
TCTCATAAATCTCATTGTTGTCGTGGGTTTGCAAATTCTCAATCTTATCT
AATCCATCACACTCATCAATCATTTGGGCATAAACATTAATCCCATTATT
CATTCCCATTTCCTTGTCAGCCTCACCCACCTTCAAAATGTTCTCAAGAC
CCTCTAGACAAACTGTCACAATCCTTGGGTCCGGACAAACCAGAAGATCA
CAGAGAGGTTTGATGCAACCTTGGCTTACCAGGAATTGAATCTGTTGATG
AGATCCTCCAGACGTGGCATTTGAGATAGCCCATGCAGCCTCCTTCTTGA
TTTCGAACTCCGCATGTTGAAGAAGGTGCACAAGAGGAAGGATGATATTG
GCCTCAATAACAGCCTGTATCTGAGCTCTATTCCCAGCTGTAATATTTGA
GATCGTCCAACAAGCTTCTTTCTTGATGCTTTTTT
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