CB290813

Overview
NameCB290813
Unique NameCB290813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig154 contig Csv1_Contig154:1..789. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 1
Query:   73 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 621
            VL L  +  ED E + P+  L   G  V  A                S    T +   G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++         ++R F+K L
Sbjct:    3 VLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEV----VVDGNWVSSRVPADLYAWMREFVKLL 165          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1
Query:   73 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 606
            VL+L  D  ED E + P+  L   G  V  A    K G +  T  H            G+   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 VLILSADQFEDVELIYPYHRLKEEGHEVLVA--SFKRGVI--TGKH------------GYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV----VVDGNWVSSRVPGDLYAWMREFVKL 164          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.176e-22
Identity = 63/182 (34.62%), Postives = 96/182 (52.75%), Query Frame = 1
Query:   73 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 606
            +L L  +  ED E + P+  L   G  V  A                S      +   G++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 ILFLSANEFEDVELIYPYHRLKEEGHEVYIA----------------SFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREV----VVDGNWVSSRHPGDLYAWMREFVKL 164          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.699e-21
Identity = 65/184 (35.33%), Postives = 94/184 (51.09%), Query Frame = 1
Query:   73 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFIRL 606
            VL+L  D  ED E + P   +   G  V  A    GK +G                    G+   ++  FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN ++    G  Y    EF++L
Sbjct:    3 VLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGK------------------HGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEV----VVDGNWVSSRHPGDLYAWMREFVKL 164          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 58/183 (31.69%), Postives = 93/183 (50.82%), Query Frame = 1
Query:   73 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 621
            VL+L  +  ED E   P   L   G+ V  A                S+  +     +G+    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   GK +A+ICHG  +L +A  VKGR+ T++  ++  LIAAGA + +       VVDGN+IT    +  P F    +K L
Sbjct:    3 VLILAENEFEDLELFYPLYRLREEGLEVKVA----------------SSSLEVRVGKKGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSRMPDDLPYFCGELIKIL 165          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 44/121 (36.36%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  262 LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 624
            ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA  P+   +  AGA + + E +   V    ++T  T +  P F R  L+ LG
Sbjct:   54 IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPAFNREALRLLG 171          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: YRAA_BACSU (Putative cysteine protease yraA OS=Bacillus subtilis GN=yraA PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.954e-13
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 1
Query:   67 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 621
            + + +L  D  ED E   P +A    G SV               A+    G +   +  G    ++    ++D + +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG  +L   D++KG+  T Y  ++  LI AGA++ + E     VV  NI+T  T +    F R  L  L
Sbjct:    3 KKIAVLVTDQFEDIEYTSPVKAYEEAGYSV--------------VAIDLEAGKEVTGK-HGEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAEV----VVSHNIVTSRTPDDLEAFNRESLNLL 168          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: Y967_METJA (Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii GN=MJ0967 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  196 PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 609
            P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL  N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + +       VVDGN+IT  +    P++ RLF
Sbjct:   51 PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYED----RGVVVDGNVITAKS----PDYARLF 192          
BLAST of CB290813 vs. ExPASy Swiss-Prot
Match: GS18_BACSU (General stress protein 18 OS=Bacillus subtilis GN=yfkM PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 48/187 (25.67%), Postives = 83/187 (44.39%), Query Frame = 1
Query:   61 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 621
            GK+  ++L   Y ED E   P +A    G  +              T + +  G     +       ++A+ D+++ + +D L+IPGG +P+ L  +D  +   + F    K + +ICHG  +L  A  + GRK T Y  ++  +  AGA  ++ E +   V    ++T  T +  P F R  L  L
Sbjct:    2 GKKIAVVLTY-YFEDSEYTEPAKAFKEAGHEL--------------TVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRTPDDIPAFNRESLALL 170          
The following BLAST results are available for this feature:
BLAST of CB290813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PFPI_PYRHO3.657e-2434.97Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRAB1.390e-2335.71Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRFU1.176e-2234.62Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
PFPI_PYRKO1.699e-2135.33Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
Y1281_ARCFU1.758e-1831.69Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
YHBO_ECOLI9.646e-1736.36Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
YRAA_BACSU4.954e-1327.57Putative cysteine protease yraA OS=Bacillus subtil... [more]
Y967_METJA8.450e-1334.00Uncharacterized protein MJ0967 OS=Methanocaldococc... [more]
GS18_BACSU1.220e-1125.67General stress protein 18 OS=Bacillus subtilis GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01df11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290813 ID=CB290813; Name=CB290813; organism=Citrus sinensis; type=EST; length=789bp
GCAACGACAGAGAGAGTGAGAGGGAGAGTGAATCCTCTGGAAATGGCAAA
CAGCAAAGGAGGCAAGAGGAGCGTGCTGCTACTATGCGGCGATTACATGG
AAGACTACGAGGCGATGGTGCCTTTTCAAGCATTACTGGCTTTCGGAGTC
TCAGTTGACGCCGCGTGTCCCGGAAAGAAATCCGGTGATGTTTGCCCCAC
TGCAGTTCATCAATCGACTGGTCATCAGACATATTCCGAGACACGTGGTC
ACAATTTCGCACTCAATGCGACATTTGATGAAATTGACCCGACCAAATAT
GATGGCTTGGTCATACCAGGAGGAAGAGCTCCAGAATATCTTGCTATGAA
TGATTCTGTGATTGACTTAGTGAGAAAATTCTCCAACTCGGGCAAAACAA
TTGCTTCCATTTGCCATGGGCAGTTAATATTGGCAGCTGCTGATGTGGTC
AAAGGTCGAAAGTGCACAGCATATCCTCCTGTGAAACCTGTGCTTATTGC
CGCTGGTGCTTCTTGGATTGAGCCAGAGACCATGGCAGCTTGTGTTGTTG
ATGGTAACATCATTACTGGGGCTACCTACGAGGGTCATCCTGAGTTCATT
CGGCTTTTTCTTAAAGCACTGGGTGGCACCATAACTGGTTCTGATAAGAG
AATTCTTTTTCTTTGTGGGGATTACATGGAAGATTATGAGGTAGCTGTTC
CTTTTCAGTCCCTTCAGGCACTAGAGTGCCATGTTGATGCTGTATGCCCC
AAAAAAAAGGCTGGGGACTCCTGCCCCACTGCTGTTCAT
back to top