CB290814

Overview
NameCB290814
Unique NameCB290814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11895 contig Csv1_Contig11895:36..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290814 vs. ExPASy Swiss-Prot
Match: WSD1_ARATH (O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 59/208 (28.37%), Postives = 98/208 (47.12%), Query Frame = 2 
Query:  155 SPRFSSVMVRD--ENGAKQRKRVEVKLINHVKFPFCPSGLSPESYDKYLGDYISEIGMQQLPQSQPLWEIHLIRSPTSHAACTLIFKLHHSLGDGFSLMGALLSCLQRADDPSLPLTLPSVFLPSTAKDESNGSIFTRVLKIFSTVSDTVLDFCWNFVKSTTAEDDQTPIRSGDDRVEFRPVRVATMTFSLDHVKQIKTKVVATINDV 772
            +PRFSS M  +  + G      V++++ +H+  P      + ++ D+++ DY S I    +  S+PLWE HL+   TS A    I K+HHS+GDG SLM  LL+C ++  DP     + +        D     +F     +      T+++F    +     ED + P+  G+    F+  +V     S + VK IK  +   +NDV
Sbjct:   59 APRFSSKMEINYKKKGEPVWIPVKLRVDDHIIVPDLEYS-NIQNPDQFVEDYTSNIANIPMDMSKPLWEFHLLNMKTSKAESLAIVKIHHSIGDGMSLMSLLLACSRKISDPD--ALVSNTTATKKPADSMAWWLFVGFWFMIRVTFTTIVEFSKLMLTVCFLEDTKNPL-MGNPSDGFQSWKVVHRIISFEDVKLIKDTMNMKVNDV 262
The following BLAST results are available for this feature:
BLAST of CB290814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WSD1_ARATH3.888e-1528.37O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01df12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290814 ID=CB290814; Name=CB290814; organism=Citrus sinensis; type=EST; length=774bp
CGCACTAGGAGAAGAATCCGAACCTGTGAGCCCTACTGCTCACCACTTGA
GCAGCTCAACTCTTTCGCTTTGCATTCTGGCTATTCTGGAGTTTGAACAA
GTACTTGATGATTCTCTACTTATGCAATTGGTTAAGGACGTTTTCCTCTG
CATCAGCCCCCGTTTTTCCTCAGTAATGGTTAGAGATGAAAACGGAGCAA
AACAACGGAAGAGAGTTGAAGTGAAGCTAATAAACCATGTCAAATTTCCT
TTTTGCCCTTCAGGATTGTCACCAGAGTCTTATGACAAGTACCTTGGTGA
CTACATTTCGGAAATTGGAATGCAGCAGCTTCCGCAAAGCCAGCCTTTAT
GGGAAATTCATCTAATCAGATCCCCTACAAGCCATGCAGCTTGTACTCTG
ATATTCAAACTTCATCATTCACTTGGCGATGGATTTTCTTTGATGGGCGC
TCTTCTTTCATGTTTACAAAGGGCTGATGATCCTTCTCTTCCATTGACAT
TACCTTCTGTTTTTTTGCCCTCGACGGCAAAGGATGAAAGCAATGGCAGC
ATTTTCACGAGGGTGCTTAAGATTTTTTCTACGGTTTCAGACACTGTATT
AGATTTCTGTTGGAACTTCGTGAAGAGTACAACGGCTGAAGATGATCAAA
CTCCGATACGATCGGGGGATGATAGAGTGGAGTTCCGGCCAGTCAGGGTA
GCAACAATGACCTTCTCTCTAGATCACGTCAAACAAATTAAGACCAAAGT
CGTTGCGACTATTAATGATGTTGT
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