CB290821

Overview
NameCB290821
Unique NameCB290821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5452 contig Csv1_Contig5452:440..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.020e-95
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1
Query:   49 FKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG 342
            FKYAGLD+DNLQNLECCLFVLFPYFSYMLAEGL LSGIVSILFTGIVMK YT+SNLS NSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG
Sbjct:  245 FKYAGLDVDNLQNLECCLFVLFPYFSYMLAEGLSLSGIVSILFTGIVMKHYTYSNLSANSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG 342          

HSP 2 Score: 176.407 bits (446), Expect = 9.020e-95
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  380 ANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXXMLEALQVVGDAHDGHLGENFE-GNNGYAAPYDEGST-SGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSH 820
            ANVF C YLVNLARPAHR+IP+ HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQ                       MLEAL+VVGD+HD  LG+ FE  N+ Y   YD+  T  G+  + KL+EF KSAASFT LD+NYLTPFFTS+
Sbjct:  357 ANVFGCGYLVNLARPAHRKIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLREFHKSAASFTELDRNYLTPFFTSN 505          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.902e-87
Identity = 89/98 (90.82%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   49 FKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG 342
            FKYAGLD +NLQNLECCLFVLFPYFSYMLAEG+GLSGIVSILFTGIVMKRYTFSNLSE SQ FVS+FFHLISSLAETF FIYMGFDIAME+HSWSH+G
Sbjct:  241 FKYAGLDTENLQNLECCLFVLFPYFSYMLAEGVGLSGIVSILFTGIVMKRYTFSNLSEASQSFVSSFFHLISSLAETFTFIYMGFDIAMEQHSWSHVG 338          

HSP 2 Score: 157.918 bits (398), Expect = 4.902e-87
Identity = 87/173 (50.29%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  332 HISGLSFSQFYSS*LPA-NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXXMLEALQVVGDAHDGHLGENFEGNNGYAAP---------YDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSH 820
            H+  + FS  +     A NVF CAYLVNL R  +++IP+KHQ+ALWYSGLRGAMAFALALQS+HDLPEGHGQ                       MLEAL+VVGD  D  + E FE ++    P          ++ S+SG++ KMKLKEF K+  SFTALDKN+LTPFFT++
Sbjct:  336 HVGFILFSILFIGVARAVNVFGCAYLVNLFRQENQKIPMKHQKALWYSGLRGAMAFALALQSLHDLPEGHGQIIFTATTTIVVVTVLLIGGSTGKMLEALEVVGDDLDDSMSEGFEESDHQYVPPPFSIGASSDEDTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTN 508          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A6_HUMAN (Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.286e-16
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   82 QNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDI 309
            Q LE  LF L  + +++LAE  G +G+V++LF GI    YT++NLS  SQ      F L++ LAE F+F YMG  +
Sbjct:  326 QLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNLSTESQHRTKQLFELLNFLAENFIFSYMGLTL 401          

HSP 2 Score: 36.965 bits (84), Expect = 3.286e-16
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 2
Query:  380 ANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQ 511
            AN++  + L+NL R +  +I    Q  + ++GLRGAMAFALA++
Sbjct:  427 ANIYPLSLLLNLGRRS--KIGSNFQHMMMFAGLRGAMAFALAIR 468          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A8_HUMAN (Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 4.284e-16
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   64 LDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSW 330
            +D+    +LE  + ++F Y  Y LAEG+ LSGI++ILF+GIVM  YT  NLS  +Q  +      ++ L ET VF ++G  I    H +
Sbjct:  289 IDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKF 377          

HSP 2 Score: 36.5798 bits (83), Expect = 4.284e-16
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALAL 508
            N+F  +YL+N  R  H+  P K    +W+SGLRGA+ +AL+L
Sbjct:  396 NIFPLSYLLNFFRD-HKITP-KMMFIMWFSGLRGAIPYALSL 435          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A8_RAT (Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.285e-16
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   64 LDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSW 330
            +D+    +LE  + ++F Y  Y LAEG+ LSGI++ILF+GIVM  YT  NLS  +Q  +      ++ L ET VF ++G  I    H +
Sbjct:  283 IDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKF 371          

HSP 2 Score: 36.5798 bits (83), Expect = 4.285e-16
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALAL 508
            N+F  +YL+N  R  H+  P K    +W+SGLRGA+ +AL+L
Sbjct:  390 NIFPLSYLLNFFRD-HKITP-KMMFIMWFSGLRGAIPYALSL 429          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A8_MOUSE (Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.285e-16
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   64 LDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSW 330
            +D+    +LE  + ++F Y  Y LAEG+ LSGI++ILF+GIVM  YT  NLS  +Q  +      ++ L ET VF ++G  I    H +
Sbjct:  284 IDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKF 372          

HSP 2 Score: 36.5798 bits (83), Expect = 4.285e-16
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALAL 508
            N+F  +YL+N  R  H+  P K    +W+SGLRGA+ +AL+L
Sbjct:  391 NIFPLSYLLNFFRD-HKITP-KMMFIMWFSGLRGAIPYALSL 430          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A9_MOUSE (Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc9a9 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.219e-16
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   88 LECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMG 300
            LE  LF L  + +++ AE  GL+GIV++LF G+    YT++NLS +S+      F  ++ LAE  +F YMG
Sbjct:  311 LETGLFFLLSWSAFLSAEAAGLTGIVAVLFCGVTQAHYTYNNLSSDSKLRTKQLFEFMNFLAENVIFCYMG 381          

HSP 2 Score: 43.1282 bits (100), Expect = 7.219e-16
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPE 532
            N++  ++L+NL R   ++IP   Q  + +SGLRGA+AFALA+++    P+
Sbjct:  411 NIYPLSFLLNLGRK--QKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPK 458          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A9_HUMAN (Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.219e-16
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   88 LECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMG 300
            LE  LF L  + +++ AE  GL+GIV++LF G+    YT++NLS +S+      F  ++ LAE  +F YMG
Sbjct:  311 LETGLFFLLSWSAFLSAEAAGLTGIVAVLFCGVTQAHYTYNNLSSDSKIRTKQLFEFMNFLAENVIFCYMG 381          

HSP 2 Score: 43.5134 bits (101), Expect = 7.219e-16
Identity = 40/145 (27.59%), Postives = 63/145 (43.45%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXXMLEALQV-VGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFT 814
            N++  ++L+NL R   ++IP   Q  + +SGLRGA+AFALA+++    P+   Q                       ML  LQ+ VG   D +L E+    +  A   D+  T     ++    FR     + + D  YL P  T
Sbjct:  411 NIYPLSFLLNLGRK--QKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPK---QMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIRVGVDLDENLKEDPSSQHQEANNLDKNMTKAESARL----FR----MWYSFDHKYLKPILT 542          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A8_CHICK (Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.238e-16
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   64 LDIDNLQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSW 330
            +D+    +LE  + ++F Y  Y LAEG+ LSGI++ILF+GIVM  YT  NLS  +Q  +      ++ + ET VF ++G  I    H +
Sbjct:  282 IDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFMCETCVFAFLGLSIFSFPHKF 370          

HSP 2 Score: 36.5798 bits (83), Expect = 7.238e-16
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 2
Query:  383 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALAL 508
            N+F  +YL+N  R  H+  P K    +W+SGLRGA+ +AL+L
Sbjct:  389 NIFPLSYLLNFFRD-HKITP-KMMFIMWFSGLRGAIPYALSL 428          
BLAST of CB290821 vs. ExPASy Swiss-Prot
Match: SL9A7_HUMAN (Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.216e-15
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   88 LECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDI-AMEKHSWS 333
            LE  LF L  + +++LAE  G +G+V++LF GI    YT++NLS  S+      F ++  LAE F+F YMG  +   +KH +S
Sbjct:  359 LETALFFLMSWSTFLLAEACGFTGVVAVLFCGITQAHYTYNNLSVESRSRTKQLFEVLHFLAENFIFSYMGLALFTFQKHVFS 441          

HSP 2 Score: 36.5798 bits (83), Expect = 1.216e-15
Identity = 18/44 (40.91%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  380 ANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQ 511
            A+++  ++ +NL R    +I    Q  + +SGLRGAMAFALA++
Sbjct:  458 AHIYPLSFFLNLGR--RHKIGWNFQHMMMFSGLRGAMAFALAIR 499          
The following BLAST results are available for this feature:
BLAST of CB290821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
NHX6_ARATH9.020e-9594.90Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH4.902e-8790.82Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
SL9A6_HUMAN3.286e-1643.42Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC... [more]
SL9A8_HUMAN4.284e-1639.33Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC... [more]
SL9A8_RAT4.285e-1639.33Sodium/hydrogen exchanger 8 OS=Rattus norvegicus G... [more]
SL9A8_MOUSE4.285e-1639.33Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc... [more]
SL9A9_MOUSE7.219e-1640.85Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc... [more]
SL9A9_HUMAN7.219e-1640.85Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC... [more]
SL9A8_CHICK7.238e-1638.20Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 ... [more]
SL9A7_HUMAN1.216e-1539.76Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290821 ID=CB290821; Name=CB290821; organism=Citrus sinensis; type=EST; length=820bp
GCTTTTATCCATTAGAATGTTTTGTGAAACCTTAATTCCCTGAACCTTTT
CAAGTATGCCGGATTGGATATTGACAATCTCCAGAACTTAGAGTGCTGTC
TCTTTGTTCTTTTTCCATATTTCTCATACATGCTTGCAGAAGGTCTTGGC
CTCTCTGGTATCGTGTCAATACTGTTTACAGGAATTGTCATGAAGCGTTA
TACCTTCTCAAATTTGTCAGAGAACTCTCAGCGATTTGTATCTGCTTTTT
TCCATTTGATATCATCATTGGCAGAGACATTTGTATTTATTTACATGGGC
TTTGATATTGCCATGGAAAAGCACAGCTGGTCACATCTCGGGTTTATCTT
TTTCTCAATTTTATTCATCATAGTTGCCAGCAAATGTCTTTTCTTGTGCA
TATTTGGTTAATTTGGCTCGACCTGCACATCGACAGATTCCTTTAAAACA
TCAACAAGCACTTTGGTACAGTGGACTTCGTGGTGCTATGGCTTTTGCTC
TTGCGTTGCAATCAGTTCATGATCTCCCTGAAGGACATGGCCAGACCATA
TTCACTGCAACTACTGCCATAGTTGTTTTGACAGTTTTATTGATTGGTGG
TTCAACTGGTACCATGCTGGAAGCTTTACAAGTTGTTGGTGATGCTCATG
ATGGCCACCTAGGCGAAAATTTCGAGGGTAACAATGGCTATGCTGCTCCT
TATGATGAGGGCTCAACATCAGGGAATAAGTTGAAGATGAAACTGAAAGA
ATTCCGCAAGAGTGCTGCATCGTTTACAGCATTAGATAAGAATTATCTTA
CCCCATTCTTTACAAGTCAC
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