CB290893

Overview
NameCB290893
Unique NameCB290893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.146e-57
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = -3
Query:  332 VCDNYYSCPESNPCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 568
            VCDNYY+CP+S  CCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  366 VCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          

HSP 2 Score: 84.3445 bits (207), Expect = 5.146e-57
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTENG DYWIV+NSWG SWGE+GY+RMERN+  + +GKCGI +E SY
Sbjct:  295 GYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSY 342          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.746e-57
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = -3
Query:  311 CDNYYSCPESNPCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 565
            CD+YY+CPESN CCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  375 CDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          

HSP 2 Score: 83.5741 bits (205), Expect = 8.746e-57
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTENG DYWIV+NSWG SWGE+GY+RM RN+A + +GKCGI +E SY
Sbjct:  303 GYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSY 350          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.422e-48
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = -3
Query:  308 CDNYYSCPESNPCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 565
            CD Y  C     CCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  256 CDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          

HSP 2 Score: 68.9366 bits (167), Expect = 6.422e-48
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+ +E SY
Sbjct:  184 GYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSY 231          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 3.138e-47
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = -3
Query:  335 VCDNYYSCPESNPCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 568
            VCD+ +SCP  + CCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  385 VCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          

HSP 2 Score: 83.5741 bits (205), Expect = 3.138e-47
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGT+NG DYWIV+NSWG  WGE+GY+RMERN+  T TGKCGI M ASY
Sbjct:  308 GYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASY 355          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.093e-37
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = -3
Query:  332 CDNYYSCPESNPCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 565
            CD Y  CP    CCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  395 CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          

HSP 2 Score: 72.4034 bits (176), Expect = 4.093e-37
Identity = 35/51 (68.63%), Postives = 37/51 (72.55%), Query Frame = -2
Query:  639 GYGTE--NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGI M ASY
Sbjct:  323 GYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASY 372          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGI +EASY
Sbjct:  311 GYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGI +EASY
Sbjct:  266 GYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTENG DYWIVKNS G +WGEAGY++M RN+A    G CGI M ASY
Sbjct:  310 GYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTEN  D+WIVKNSWG +WGE+GYIR ERN+     GKCGI   ASY
Sbjct:  167 GYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASY 214          
BLAST of CB290893 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = -2
Query:  639 GYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIPMEASY 785
            GYGTENG DYW+VKNS G +WGEAGY++M RN+A    G CGI M ASY
Sbjct:  303 GYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
The following BLAST results are available for this feature:
BLAST of CB290893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ORYA_ORYSJ5.146e-5775.95Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH8.746e-5768.24Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC6.422e-4865.12Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ3.138e-4762.82Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ4.093e-3747.56Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH9.516e-1773.47Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA8.056e-1675.51Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH4.887e-1369.39Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPGP2_ZINOF6.383e-1367.35Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CPR3_ARATH1.422e-1267.35Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290893 ID=CB290893; Name=CB290893; organism=Citrus sinensis; type=EST; length=786bp
GATAAAAGCCTCCGCTGAATGACGCCAGGGATTTGGTAGAGGACATTGGA
AATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAACGCAGATAG
ATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAATATTTAACA
GACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCAGTAAAAT
GAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATTTTCATCCT
CCCTTCGGGCTTCCACTGCTCTTACAGTGCCAACTATAATTAAGCACTGC
TACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGT
CGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCC
AGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGT
CATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAA
GAGTTACCATACTCAAAGACACAGCAGCAAGGGTTGCTCTCAGGGCAAGA
GTAATAATTGTCACACACAGCAGAGAGGCTTTGTTGGATATGGAGGGGAC
GGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTC
CATGGGAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCA
TCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACA
ATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
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