CB290907

Overview
NameCB290907
Unique NameCB290907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.721e-69
Identity = 128/207 (61.84%), Postives = 163/207 (78.74%), Query Frame = -1
Query:  182 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 802
            TGSTA   VD+IG+LL+ G+L +IVGIPTSK+T+EQA SL IPL+ LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E ASK FVV+ D+SK+V  +GGSKLA+PVE+V FCWK+   +L+ L    GCEA LR GE GK ++TDN NYI+D++ E  + D  +    I +L GVVEHG+FLDMA+ VIIAG+ GV++K+K
Sbjct:   58 TGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.386e-47
Identity = 104/204 (50.98%), Postives = 139/204 (68.14%), Query Frame = -1
Query:  194 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVD-PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 802
            TGSTAAF V  + Q ++   L+  +G+PTS+RT EQA+SL IPL TL++ P LDLAIDGADE++   LNL+KG GGALLREK+VEA++   +++AD SK V+ L G++  +PVEVV+F WK  L R++     LGC+A LR    G PY+TD  +YI+D  F  PI +      ++    GVVEHGLF+ MAT  IIAG  G+E
Sbjct:   29 TGSTAAFAVGALAQRMQKEGLQ-FIGVPTSERTAEQARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVE----ALGCQAVLRRTAEGDPYLTDEQHYILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.574e-44
Identity = 98/202 (48.51%), Postives = 131/202 (64.85%), Query Frame = -1
Query:  197 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 802
            +GSTA F +  I +L+K G+L+DIVGIP+S  TEE A+SL IPL   ++H  +D+ IDGADEVDP+LNL+KG GGALLREK+V  A+K  +++ DESK+   L G+  A+PVEVV F        L+     LG +  +RE + GK + TDN N I+D  F  P+ D V  G  + +  GVVEHGLFL     VI+AG  G+
Sbjct:   29 SGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFATASETRFLE----SLGAKVTVRENQLGKAFKTDNHNRILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_BACCR (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.898e-42
Identity = 93/203 (45.81%), Postives = 130/203 (64.04%), Query Frame = -1
Query:  194 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 802
            TGST  + + K+G+ +K G       +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +P+E++ F WK    + ++  + LGC+  LR  +N + YITDN N IID  F   I + V   T++  + GVVE GLF+ M +  II  K G++
Sbjct:   25 TGSTVYWTIQKLGERVKEG--LSFQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKKLIIIADESKLVTHLG--TFPLPIEIIPFSWK----QTENKIQSLGCQTTLRL-KNNETYITDNNNMIIDCIFPNHISNPVHLHTQLKMITGVVETGLFISMTSTAIIGTKNGIK 218          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.589e-41
Identity = 98/202 (48.51%), Postives = 129/202 (63.86%), Query Frame = -1
Query:  197 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 802
            TGSTA+F++  +   L  G L+ +VG+PTS++T   A+ L IPLTTLD HPSLDLA+DGADE+DP L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F     + RL      LG E  LR   +G P++TD  N I+D +F   I D  +    I  + GVV HGLFL MA+  +IAG  G+
Sbjct:   28 TGSTASFMLRGLAARLADGRLQRVVGVPTSEQTAVLARELGIPLTTLDRHPSLDLALDGADEIDPHLRLIKGLGGAMLREKIVAASAARFVVMASVSKRVERL-GERSPLPVEVVTFGMPLCIRRL----AALGGEPVLRCDHSGAPFVTDEGNLILDCHFGV-IADPEALAAAICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.678e-40
Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = -1
Query:  194 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 802
            TGST  + + K+G  ++ G    I  +PTSK TE  AK L+IPL +L++   LDL IDGADE++ +L L+KG GGALLREK+V  +SK  +++ADESKLVS LG     +P+E++ F WK    R+Q     LGCE  LR  ++ +P+ITDN N IID  F   I +     TE+  + GVVE GLF++M +  II  K G++
Sbjct:   26 TGSTVYWTIQKLGHRVQEG--LSIQAVPTSKETEVLAKQLSIPLISLNEIDILDLTIDGADEINNDLQLIKGGGGALLREKIVATSSKELIIIADESKLVSHLG--TFPLPIEIISFSWKQTEKRIQ----SLGCETHLRM-KDSRPFITDNGNLIIDCIFPNKILNPNDTHTELKMITGVVETGLFINMKSKAIIGTKNGIK 219          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_CHLSY (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.739e-40
Identity = 90/202 (44.55%), Postives = 130/202 (64.36%), Query Frame = -1
Query:  194 GSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 799
            GSTAA+    I + L  G+L DIVG+P ++ T + A+ L IPLTTLD+  ++DL IDGADEVDP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   32 GSTAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGADEVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAA (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.739e-40
Identity = 90/202 (44.55%), Postives = 130/202 (64.36%), Query Frame = -1
Query:  194 GSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 799
            GSTAA+    I + L  G+L DIVG+P ++ T + A+ L IPLTTLD+  ++DL IDGADEVDP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   32 GSTAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGADEVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.739e-40
Identity = 92/203 (45.32%), Postives = 130/203 (64.04%), Query Frame = -1
Query:  194 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 802
            TGST  + ++K+G+ +K G       +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L+L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +PVE++ F WK    ++Q     LGC+  LR  +N + +ITDN N IID  F   I +  +    +  + GVVE GLF++M +  II  K G++
Sbjct:   25 TGSTVYWTIEKLGERVKEG--LSFQAVPTSKETEVLAQQLNIPLISLNDIQSLDLTIDGADEIDSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLG--TFPLPVEIIPFSWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIIDCVFPHNITNPANLHNHLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of CB290907 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.739e-40
Identity = 92/203 (45.32%), Postives = 127/203 (62.56%), Query Frame = -1
Query:  194 TGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 802
            TGSTA + + K+GQ +K G    I  +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  LR  +N + +ITDN N IID  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   25 TGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
The following BLAST results are available for this feature:
BLAST of CB290907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_ARATH1.721e-6961.84Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_SYNJA5.386e-4750.98Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_DESAA5.574e-4448.51Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_BACCR8.898e-4245.81Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_ROSCS2.589e-4148.51Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_BACWK1.678e-4045.81Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_CHLSY3.739e-4044.55Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_CHLAA3.739e-4044.55Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_BACC13.739e-4045.32Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_BACAN3.739e-4045.32Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290907 ID=CB290907; Name=CB290907; organism=Citrus sinensis; type=EST; length=802bp
TTTATGTTTGACTCTACATCCTGCCCAATTCAAGATACAAAATTTCTACT
GAGAACCCGCATTGCCAAATCTAACATTTAAACTAAAATTAAGTCCAAAA
AAAAATATCAGAGTAATGAACAACAAGAAGAAGGACAAATTATAAAAAAC
CAAATTTTTTAAATCCTCACCGCCATCATCACTTGCTCTTAACTTCAACA
CCAGTCTTCCCAGCTATGATCACAGCAGTCGCCATATCCAAAAACAACCC
GTGTTCCACAACTCCTTCGAGCTTCCCAATCTCCGTCCCAGCTGAAACCC
CGTCTTTAATGGGCGTCTCGAAATACAAATCGATAATGTAGTTAAAATTA
TCAGTGATATAAGGCTTCCCGTTTTCCCCTTCTCTAAGCTTGGCCTCACA
ACCCAGTTCCCTGAACAAGTCTTGAAGCCTAACCAAATTGTATTTCCAGC
AAAACTGAACCACTTCAACTGGCATCGCAAGCTTACTCCCACCGAGTCCG
CTCACTAATTTACTCTCATCAGCCACAACAACGAAGCTTTTCGACGCAGC
TTCCACCATCTTCTCTCTCAAAAGCGCCCCGCCTCGGCCTTTAACGAGGT
TCAATTCTGGGTCAACCTCATCGGCGCCGTCAATGGCCAAATCCAGTGAT
GGGTGATCGTCAAGTGTGGTTAAGGGAATGTTAAGCGACTTGGCTTGCTC
TTCCGTGCGTTTTGAAGTTGGGATTCCGACGATGTCCCTTAACTCGCCGG
TTTTCAAGAGTTGGCCGATCTTGTCGACGACGAAGGCGGCGGTGGAGCCG
GT
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