CB290908

Overview
NameCB290908
Unique NameCB290908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.168e-67
Identity = 121/189 (64.02%), Postives = 157/189 (83.07%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLYIK 769
            LTQD+LK++AA KAV++V+SGM LGLGTGST    VD+IG+LL+ G+L +IVGIPTSK+T+EQA SL IPL+ LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E ASK FVV+ D+SK+V  +GGSKLA+PVE+V FCWK+   +L+ L +  GCEA L+ GE GK ++TDN NYI+D++++
Sbjct:   31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNGNYIVDMHVE 219          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44
Identity = 95/183 (51.91%), Postives = 130/183 (71.04%), Query Frame = 2
Query:  212 DDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVD-PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            D+LK+ AA  A   V+SGM +GLGTGST AF V  + Q ++   L+  +G+PTS+RT EQA+SL IPL TL++ P LDLAIDGADE++   LNL+KG GGALLREK+VEA++   +++AD SK V+ L G++  +PVEVV+F WK  L R++     LGC+A L+    G PY+TD  +YI+D
Sbjct:    5 DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGLQ-FIGVPTSERTAEQARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVE----ALGCQAVLRRTAEGDPYLTDEQHYILD 181          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44
Identity = 94/184 (51.09%), Postives = 129/184 (70.11%), Query Frame = 2
Query:  206 TQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            +QD LKK AA+KAV+Y++SGM +GLG+GST  F +  I +L+K G+L+DIVGIP+S  TEE A+SL IPL   ++H  +D+ IDGADEVDP+LNL+KG GGALLREK+V  A+K  +++ DESK+   L G+  A+PVEVV F        L+     LG +  ++E + GK + TDN N I+D
Sbjct:    3 SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFATASETRFLE----SLGAKVTVRENQLGKAFKTDNHNRILD 181          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.464e-41
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 2
Query:  221 KKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIIDLY 763
            ++ AA++A+DYV+SGMA+GLGTGST +F++  +   L  G L+ +VG+PTS++T   A+ L IPLTTLD HPSLDLA+DGADE+DP L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F     + RL      LG E  L+   +G P++TD  N I+D +
Sbjct:    7 RRRAAERALDYVESGMAIGLGTGSTASFMLRGLAARLADGRLQRVVGVPTSEQTAVLARELGIPLTTLDRHPSLDLALDGADEIDPHLRLIKGLGGAMLREKIVAASAARFVVMASVSKRVERL-GERSPLPVEVVTFGMPLCIRRL----AALGGEPVLRCDHSGAPFVTDEGNLILDCH 182          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.712e-40
Identity = 88/181 (48.62%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  215 DLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            DLK++A + A  +VK GM +GLGTGST  + + K+GQ +K G    I  +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  L+  +N + +ITDN N IID
Sbjct:    2 DLKQIAGEYAATFVKDGMKIGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIID 173          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 88/181 (48.62%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  215 DLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            DLK++A + A  +VK GM +GLGTGST  + + K+GQ +K G    I  +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  L+  +N + +ITDN N IID
Sbjct:    2 DLKQIAGEYAATFVKDGMKIGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIID 173          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BACHK (Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.626e-40
Identity = 87/181 (48.07%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  215 DLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            DLK++A + A  +VK GM +GLGTGST  + + K+GQ +K G    I  +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  L+  +N + +ITDN N I+D
Sbjct:    2 DLKQIAGEYAATFVKDGMKVGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIVD 173          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_PARL1 (Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.041e-40
Identity = 90/187 (48.13%), Postives = 122/187 (65.24%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKL--KEGENGKPYITDNFNYIID 757
            +  DD KK AA +A+++VK GM LG+GTGST    V  +G+ +K G   DIVG+PTS+RT + A SL IPLT LDD P LD+ +DGADE+D +L L+KG GGALLREK+V  AS   +V+AD SKLV  LG     +PVEV+ F       ++ ++    GC  K+  +  E G+P+ TD+ N+I D
Sbjct:    1 MNADDQKKAAAVRALEFVKPGMKLGMGTGSTAEHFVRALGEKVKAG--LDIVGVPTSERTAKLAASLGIPLTNLDDTPHLDITVDGADELDGKLRLIKGGGGALLREKIVATASDRMIVIADASKLVKTLG--SFPLPVEVIPFGSAVTARKIAEVASAHGCTGKMSRRADEYGEPFFTDSENFIYD 183          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.346e-39
Identity = 85/190 (44.74%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  203 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKL--KEGENGKPYITDNFNYIIDLYI 766
            +T D LK+ AA +A++YV+ GM LGLGTGST    V+ +G+ ++ G    +VG+PTS+ T   A+   IPLTTLDD   LDL +DGADE+DP+LNL+KG GGALLREK+V AAS+  +V+ADE+K V+GLG  +  +P+EV+ F        + + F + G   ++  ++G +G  ++TD  ++I D ++
Sbjct:    1 MTLDALKRQAAARALEYVEDGMRLGLGTGSTAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGIPLTTLDDLDRLDLTVDGADEIDPDLNLIKGGGGALLREKIVAAASERMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAIAEAFTKAGASGQMVVRKGPDGLAFVTDGGHWIFDAHL 186          
BLAST of CB290908 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.346e-39
Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  215 DLKKLAADKAVDYVKSGMALGLGTGSTGAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFKELGCEAKLKEGENGKPYITDNFNYIID 757
            +LK+LA + A  +VK GM +GLGTGST  + ++K+G+ +K G       +PTSK TE  A+ LNIPL +L+D  SLDL IDGADE+D  L+L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +PVE++ F WK    ++Q     LGC+  L+  +N + +ITDN N IID
Sbjct:    2 NLKQLAGEYAATFVKDGMKIGLGTGSTVYWTIEKLGERVKEG--LSFQAVPTSKETEVLAQQLNIPLISLNDIQSLDLTIDGADEIDSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLG--TFPLPVEIIPFSWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIID 173          
The following BLAST results are available for this feature:
BLAST of CB290908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
RPIA_ARATH1.168e-6764.02Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_SYNJA4.043e-4451.91Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_DESAA4.043e-4451.09Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_ROSCS5.464e-4150.28Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_BACAN2.712e-4048.62Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_BACCZ3.542e-4048.62Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_BACHK4.626e-4048.07Ribose-5-phosphate isomerase A OS=Bacillus thuring... [more]
RPIA_PARL16.041e-4048.13Ribose-5-phosphate isomerase A OS=Parvibaculum lav... [more]
RPIA_NITHX1.346e-3944.74Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]
RPIA_BACC11.346e-3949.17Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290908 ID=CB290908; Name=CB290908; organism=Citrus sinensis; type=EST; length=780bp
GAACAACTTCTCACAACTCACATCTCATTTATTTTCCTCTCAAACTCACC
CCATCACCACCACAGCCTCCGCCCAAGAAAAATGACATTCTTTATCCTTC
CTCCCCACTCTCCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCC
CAAATCCCTCAGACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGG
CCCTCACCCAAGACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGAC
TACGTCAAATCCGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGGCGC
CTTCGTCGTCGACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGG
ACATCGTCGGAATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCG
CTTAACATTCCCTTAACCACACTTGACGATCACCCATCACTGGATTTGGC
CATTGACGGCGCCGATGAGGTTGACCCAGAATTGAACCTCGTTAAAGGCC
GAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAGCTGCGTCCAAAAGC
TTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGCGGACTCGGTGGGAG
TAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTGCTGGAAATACAATT
TGGTTAGGCTTCAAGACTTGTTCAAGGAACTGGGTTGTGAGGCCAAGCTT
AAAGAAGGGGAAAACGGGAAGCCTTATATCACTGATAATTTTAACTACAT
TATCGATTTGTATATCAAGACGGCCATTAA
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