CB290909

Overview
NameCB290909
Unique NameCB290909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.422e-34
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  C+ Y+           CC+GIKSLNSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:    5 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.422e-34
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  C+ Y+           CC+GIKSLNSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:    1 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.611e-31
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLAC VL+MCMV+ AP+A+ A++CG VTS L  C+ Y+T          CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct:    5 MKLACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.570e-31
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  123 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 467
            +KLAC VL++CMV+ AP+A+ A++CG VTS L  C+ Y+T          CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS + +C+ V+
Sbjct:    5 MKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.102e-30
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = -2
Query:  123 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 455
            C VL+MCMV+ AP+A+ A++CG VTS L  C+ Y+T          CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    1 CVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = -2
Query:  123 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 470
            ++ LAC  L+MCMV+ AP+A+AAV+CG VT  L  C+PY+T          CC+G+K L +AA TT DRQ+ CNCLKTAAG+I NLN   A+ LP +C VNIPY+IS + +C+ ++
Sbjct:    4 SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDS--CCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.079e-29
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = -2
Query:  123 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 470
            ++KLAC VL+MCM++ AP+A+ A++CG VT  L  C+ Y+T          CC G+K L +AA TTPDRQ+ CNC+K+AA SI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    4 SMKLACVVLVMCMIV-APMAEGAISCGAVTGDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -2
Query:  126 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 467
            +KLACAVLL C+V+ AP A+A +TCG V+S L  C+ Y+           CC GIK+LN+AA TTPDR++ CNCLK+AA +I+ +N   A+GLP  CGV+IPY ISPS +C+ V
Sbjct:    7 IKLACAVLL-CIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPLGGG---CCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 58/116 (50.00%), Postives = 84/116 (72.41%), Query Frame = -2
Query:  123 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 470
            ++K+ C  L+MC+V+ AP+A++A+TCG+V ++L  C+ Y+           CC G+++LNSAA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +C VNIPY+IS S +C+ +R
Sbjct:    3 SMKVVCVALIMCIVI-APMAESAITCGRVDTALAPCLGYLQGGPGPSAQ--CCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB290909 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  123 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMPYVTXXXXXXXXXPCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 473
            +A K+AC V+L CMV+ AP A+A +TCGQVTS+L  C+ Y+           CC G+K+L ++A TT DRQ  C CLK+AAG+I  +NL  A+GLP  CGVNIPY+ISPS DCS+V+
Sbjct:    3 IAGKIACFVVL-CMVVAAPCAEA-ITCGQVTSNLAPCLAYLRNTGPLGR---CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CB290909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_GOSHI5.422e-3459.83Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI5.422e-3459.83Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP6_LENCU5.611e-3154.78Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU9.570e-3153.91Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP4_LENCU8.102e-3054.95Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP3_LENCU2.357e-2951.72Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP5_LENCU3.079e-2951.72Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_SPIOL5.251e-2953.51Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_CICAR1.996e-2850.00Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_TOBAC4.446e-2853.85Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290909 ID=CB290909; Name=CB290909; organism=Citrus sinensis; type=EST; length=537bp
ATGCATACTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCCACT
TTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCATAT
ATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGATGGG
CTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGAAGC
GAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGCAGT
TGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAGACTC
TTAATCCCGCTACAGCAGGGTGGGGGCACAGCGCCTCCACCGGGGCCCGT
CACATATGGCATGCACGCTTGAAGAGAGCTTGTCACTTGGCCACATGTGA
CGGCAGCTTGGGCAATGGGCGCACCCATCACCATGCACATTAGCAGCACA
GCACAAGCAAGCTTAAGAGCCATGTATAATGTTCTTAATTAGCTCTGAGA
AATGAGAATGTTGCTTAACTTGGAACTTTTCCTCGTG
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