CB290910

Overview
NameCB290910
Unique NameCB290910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   67 MALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            M+LKLAC V+L CMV+GAP+AQ A T GQVT+SL  C+ Y                IKSLNS A TTP R + C C+K+AA  I  +N  LASGL  +CGVNIPY+ISPS DC  V+
Sbjct:    5 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   67 MALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            M+LKLAC V+L CMV+GAP+AQ A T GQVT+SL  C+ Y                IKSLNS A TTP R + C C+K+AA  I  +N  LASGL  +CGVNIPY+ISPS DC  V+
Sbjct:    1 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            +KLAC VL+MCMV+ AP+A+ A +CG VTS L  C+ Y                +K L + A TTPDR + CNCLK+AAGSI  LN N A+ L  +CGV+IPY+IS S +C  V+
Sbjct:    5 MKLACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGG--VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.229e-23
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            +KLAC VL++CMV+ AP+A+ A +CG VTS L  C+ Y                +K L + A TTPDR + CNCLK+AAGSI  LN N A+ L  +CGVNIPY+IS + +C  V+
Sbjct:    5 MKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGG--VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.102e-23
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   73 LKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKV 414
            +KLACAVLL C+V+ AP A+A  TCG V+S L  C+ Y                IK+LN+ A TTPDR + CNCLK+AA +I+ +N   A+GL   CGV+IPY ISPS +C  V
Sbjct:    7 IKLACAVLL-CIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPLGGGCCGG---IKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   85 CAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            C VL+MCMV+ AP+A+ A +CG VTS L  C+ Y                +K L + A TTPDR + CNCLK+AAGSI  LN N A+ L  +CGVNIPY+IS S +C  V+
Sbjct:    1 CVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGG--VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   67 MALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            +A K+AC V+L CMV+ AP A+A  TCGQVTS+L  C+ Y                +K+L ++A TT DR   C CLK+AAG+I  +NL  A+GL   CGVNIPY+ISPS DC+KV+
Sbjct:    3 IAGKIACFVVL-CMVVAAPCAEAI-TCGQVTSNLAPCLAYLRNTGPLGRCCGG---VKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   70 ALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            ++KLAC VL+MCM++ AP+A+ A +CG VT  L  C+ Y                +K L + A TTPDR + CNC+K+AA SI  LN N A+ L  +CGVNIPY+IS S +C  V+
Sbjct:    4 SMKLACVVLVMCMIV-APMAEGAISCGAVTGDLSPCLTYLTGGPGPSPQCCGG--VKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   70 ALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            ++K+ C  L+MC+V+ AP+A++A TCG+V ++L  C+ Y                +++LNS A TTPDR + CNCLK+AAGSI  LN N A+ L  +C VNIPY+IS S +C  +R
Sbjct:    3 SMKVVCVALIMCIVI-APMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGG--VRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB290910 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   70 ALKLACAVLLMCMVMGAPIAQAADTCGQVTSSLQACMPYXXXXXXXXXXXXXXXXIKSLNSTATTTPDRHSVCNCLKTAAGSIRNLNLNLASGLQRQCGVNIPYQISPSVDCTKVR 417
            ++ LAC  L+MCMV+ AP+A+AA +CG VT  L  C+PY                +K L + A TT DR + CNCLKTAAG+I NLN   A+ L  +C VNIPY+IS + +C  ++
Sbjct:    4 SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAG--VKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
The following BLAST results are available for this feature:
BLAST of CB290910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
NLTP2_GOSHI1.833e-2753.85Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI1.833e-2753.85Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP6_LENCU7.208e-2448.70Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.229e-2347.83Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_SPIOL6.102e-2349.12Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP4_LENCU1.041e-2248.65Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP1_TOBAC1.775e-2249.57Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP5_LENCU3.955e-2245.69Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_CICAR5.165e-2244.83Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP3_LENCU5.165e-2244.83Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290910 ID=CB290910; Name=CB290910; organism=Citrus sinensis; type=EST; length=633bp
AGCACAATGAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAAAGCTA
ATTAAGAACATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAA
TGTGCATGGTGATGGGTGCGCCCATTGCCCAAGCTGCCGACACATGTGGC
CAAGTGACAAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGG
TGGAGGCACTGTGCCGCCAACCTGCTGTACCGGGATTAAGAGTCTTAACT
CCACAGCCACCACCACACCCGACCGCCATAGCGTTTGCAACTGCTTGAAA
ACCGCTGCTGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCT
CCAACGCCAGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTG
ACTGCACCAAAGTGAGATGAACATCTTGGAAAAGATAATATATGCTGAAG
TATTATTATATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATA
TGGACTCTCCTAGGTCAAGAGAGAATTAGTACTATGCATCTATCATATAT
GTACCAAAGTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAAT
ATACTACTTTGTTATTTAAAAAAAAAAAAAAAA
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