CB290912

Overview
NameCB290912
Unique NameCB290912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290912 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.172e-46
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 3 
Query:  207 MARSLFKAKLLLAPVADGISLSIGRRGYAATAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPVTGYYRPENRAVKIDPAELREMLLNHKVRAH 497
            MARSLFKAKLLLAPVADGISLSI RRGYAA APLGTISRTGIMEKNDL PAVREDSGASSAWAPDP+TGYYRPENRAV+IDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of CB290912 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:  207 MARSLFKAKLLLAPVADGISLSIGRRGYAATAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPVTGYYRPENRAVKIDPAELREMLLNHKVRA 494
            MARS+   KLL A + DG+ +SI RRGY+   P     +  R G M K +   A++E S +     SSAWAPDPVTGYYRPEN   +ID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of CB290912 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:  207 MARSLFKAKLLLAPVADGISLSIGRRGYAATAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPVTGYYRPENRAVKIDPAELREMLLNHKVRA 494
            MARS+   K L A V D + +SI RRGY+   P     +  R G M K +   A++E S +     SSAWAPDPVTGYYRPEN   +ID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of CB290912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI2.172e-4694.85Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.047e-2052.88Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.467e-1850.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290912 ID=CB290912; Name=CB290912; organism=Citrus sinensis; type=EST; length=714bp
AGCACCAGGTTTCTCCTCTCTCTTTATGGATAACAGAAAACCCTAAAGCC
TTCTTCCTCACGAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCT
ATAGCTACTGCAGGAGCACAATCTTTCTTCTTCTGTAGTAGCACTGTACA
GAAACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAAT
AAAACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGT
TGCTGATGGCATCTCGCTCTCCATTGGCAGGAGAGGATATGCTGCAACAG
CACCCTTGGGAACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTG
ACGCCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGA
TCCCGTCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCAAGATTGATC
CAGCAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAG
GGAGTGGTCGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAAC
TTTTAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTAAAGTCTTT
GCTGTTGTTTTGATATCAACTGTTATTTACAACTGTTAATAGTGCATTTC
CATGATTTTGTCTCTATTAACTTGTCAATAAAAGTAAAGAATGCCTGTAA
AAAAAAAAAAAAAA
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