CB290993

Overview
NameCB290993
Unique NameCB290993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.675e-85
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAP G+GIVAARVPK VL FAGIDDVFTSSRGST+TLGNF
Sbjct:  103 AGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221

HSP 2 Score: 108.612 bits (270), Expect = 2.675e-85
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            EE+KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPV KQTR
Sbjct:   41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTR 102
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.464e-84
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAP G+GIVAARVPK VL FAGIDDVFTSSRGST+TLGNF
Sbjct:  112 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 230

HSP 2 Score: 103.99 bits (258), Expect = 8.464e-84
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            EE+KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPV KQTR
Sbjct:   50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTR 111
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.879e-83
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAP G+GIVAARVPK VL FAGIDDVFTSSRGST+TLGNF
Sbjct:  111 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229

HSP 2 Score: 102.834 bits (255), Expect = 1.879e-83
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            EE KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPV KQTR
Sbjct:   49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTR 110
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.879e-83
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAP G+GIVAARVPK VL FAGIDDVFTSSRGST+TLGNF
Sbjct:  111 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229

HSP 2 Score: 102.834 bits (255), Expect = 1.879e-83
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            EE KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPV KQTR
Sbjct:   49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTR 110
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.208e-76
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR++PAP G GIV+A VPK +L  AGI+D +TS+RGST TLGNF
Sbjct:  101 AGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNF 219

HSP 2 Score: 100.523 bits (249), Expect = 1.208e-76
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:  174 EEEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            E+  +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPV KQTR
Sbjct:   38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTR 100
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.572e-73
Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAP G GIV+A VPK +L  AGIDD +TS+RG T TLGNF
Sbjct:  103 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNF 221

HSP 2 Score: 92.4337 bits (228), Expect = 1.572e-73
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            E+ +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPV KQTR
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTR 102
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.674e-73
Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV VR++PAP G GIV+A VPK +L  AGIDD +TS+RG T TLGNF
Sbjct:  104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNF 222

HSP 2 Score: 90.1225 bits (222), Expect = 2.674e-73
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 3 
Query:  180 EDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            + +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMPV KQTR
Sbjct:   43 DKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.928e-73
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAP G GIV+A VPK +L  AGIDD +TS+RG T TLGNF
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNF 236

HSP 2 Score: 90.8929 bits (224), Expect = 5.928e-73
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            E+ +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPV KQTR
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTR 117
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.928e-73
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAP G GIV+A VPK +L  AGIDD +TS+RG T TLGNF
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNF 236

HSP 2 Score: 90.8929 bits (224), Expect = 5.928e-73
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            E+ +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPV KQTR
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTR 117
[Close]
BLAST of CB290993 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.008e-72
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:  364 AGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPHGAGIVAARVPKNVLHFAGIDDVFTSSRGSTRTLGNF 720
            AGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAP G GIV+A VPK +L  AGIDD +TS+RG T TLGNF
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNF 236

HSP 2 Score: 90.1225 bits (222), Expect = 1.008e-72
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  177 EEDKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVHKQTR 362
            E+ +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPV KQTR
Sbjct:   56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTR 117
The following BLAST results are available for this feature:
BLAST of CB290993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
RS24_ARATH2.675e-8590.7640S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH8.464e-8492.4440S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH1.879e-8392.4440S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH1.879e-8392.4440S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME1.208e-7680.6740S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU1.572e-7380.6740S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA2.674e-7381.5140S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT5.928e-7379.8340S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE5.928e-7379.8340S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN1.008e-7279.8340S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290993 ID=CB290993; Name=CB290993; organism=Citrus sinensis; type=EST; length=721bp
GCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAA
ACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCACAGAGGAAGAAGATAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAC
AAACAGACACGGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCG
TCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAG
GTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGAT
TCCTGTGAGAAGGGGTTACTGGGGTAACAAAATCGGGAGGCCACACACCG
TGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTT
CCGGCCCCACATGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAACGT
GCTGCACTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGA
CCAGGACTCTTGGAAACTTTG
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