CB290996

Overview
NameCB290996
Unique NameCB290996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.031e-20
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = -2
Query:   95 TRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 283
            T GNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    4 TCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.167e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   92 TRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 283
            T GNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.012e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = -2
Query:   98 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 277
            GNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    6 GNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = -2
Query:   95 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 274
            NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    7 NCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = -2
Query:   98 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 274
            NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    7 NCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -2
Query:   95 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 277
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -2
Query:   95 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 277
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB290996 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = -2
Query:   95 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 277
            GNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB290996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA1.031e-2066.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC8.167e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.012e-1666.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO6.471e-1560.00Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV1.104e-1459.32Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ2.082e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.082e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.323e-1147.54Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290996 ID=CB290996; Name=CB290996; organism=Citrus sinensis; type=EST; length=284bp
TTGTATCACCCTTACATTATTCTTAACCCCCACAATCTTTAGGCACACTT
GCAGCTTCTTATTTTTTGCTGCATGTGCTTGCTTATTAGTGACTACCACA
AGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTCAG
CCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAAGCTCAAG
TCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACACACTG
GCTCCTGTCAGCGCAGTCGCAGTTGCCCCTCGTG
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