CB290997

Overview
NameCB290997
Unique NameCB290997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290997 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.482e-15
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2
Query:    2 GNCDCADRSQCVKKGSSYAADFLETDLSFVSTVV 103
            GNCDCAD++QCVKKGSSY AD +ET+ S ++ V+
Sbjct:    6 GNCDCADKTQCVKKGSSYTADIIETEKSIMTVVM 39          

HSP 2 Score: 48.9062 bits (115), Expect = 1.482e-15
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  111 DVQAAEAEGNCKCGPTCACVNCTCG 185
            D  AAE +G CKCGP+C+C NCTCG
Sbjct:   40 DAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB290997 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.663e-13
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 2
Query:    2 GNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVTGRS 118
            GNCDC D+SQCVKKG+SY  D +ET+ S+V  V+V   +
Sbjct:    5 GNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEA 43          

HSP 2 Score: 41.5874 bits (96), Expect = 1.663e-13
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  117 QAAEAEGNCKCGPTCACVNCTCGS 188
            +AAE +G CKCG  CAC +C CG+
Sbjct:   42 EAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB290997 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 8.445e-12
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 2
Query:    2 GNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVV 106
            GNCDCAD SQCVKKG+S   D +ETD S++  VV+
Sbjct:    6 GNCDCADSSQCVKKGNS--IDIVETDKSYIEDVVM 38          

HSP 2 Score: 43.1282 bits (100), Expect = 8.445e-12
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  114 VQAAEAEGNCKCGPTCACVNCTC 182
            V AAE+ G CKCG +C CVNCTC
Sbjct:   40 VPAAESGGKCKCGTSCPCVNCTC 62          
The following BLAST results are available for this feature:
BLAST of CB290997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MT3_CARPA1.482e-1564.71Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.663e-1356.41Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE8.445e-1262.86Metallothionein-like protein type 3 OS=Actinidia d... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ag12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290997 ID=CB290997; Name=CB290997; organism=Citrus sinensis; type=EST; length=292bp
GGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCA
GCTATGCTGCTGACTTCCTCGAGACTGACTTGAGCTTTGTCAGCACCGTT
GTTGTCACTGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCG
GCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAACCA
AACACATGCAGCAAAAAATAGGAAGCTGCAAGTGTGCCTAAATATTGTGG
GGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAAAAAAA
back to top