CB290998

Overview
NameCB290998
Unique NameCB290998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.468e-46
Identity = 88/133 (66.17%), Postives = 109/133 (81.95%), Query Frame = -3
Query:  373 RTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 771
            RT+SK V +GPSKSA+T+FKYIAPEQVPV+YGGLS++      T + +TE +VKPA+ YT+E+P +E   L WELRVLG DVSYGA+F P+ EGSY VIVSKTRK+  TDEPVI D+FK+GEPGK+V+TIDNQ
Sbjct:  430 RTRSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKDTP---LTEETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQ 559          
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.834e-45
Identity = 93/133 (69.92%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  373 RTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 771
            RT+SK V SGPSKSAET+FKY+APE VPV+YGGLS++    FT  D VTE VVK  SKYT+++P TE S L WELRVLG DVSYGA+F PS E SYTVIVSK RKV  TDEPVI D+FK  E GKVV+TIDNQ
Sbjct:  538 RTRSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKDSP--FTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQ 668          
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.122e-43
Identity = 83/143 (58.04%), Postives = 110/143 (76.92%), Query Frame = -3
Query:  376 MISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREG---EQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 795
            +I PF+T R+KSK VF+GPS+SAETLFKYI+PEQVPVQYGGLS +      +F+  D  +E+ VKP +K TVEI + E+  LVWE+RV GW+VSY AEFVP  + +YTV++ K RK+ P+DEPV+  +FK+ E GKV+LT+DN
Sbjct:  331 VIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDN 473          
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.364e-42
Identity = 83/144 (57.64%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  376 RMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREG---EQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 798
            R+ISPF++QR+KSK VF+GPS+SAETL KYI+PE VPVQYGGLS +      +FT  D  TE+ VKP +K TVEI V E+  +VWE+RV+GW+VSYGAEFVP  +  YTVI+ K RK+   +E V+  +FK+GE G+++LT+DN
Sbjct:  505 RIISPFMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDN 648          
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.047e-34
Identity = 75/141 (53.19%), Postives = 101/141 (71.63%), Query Frame = -3
Query:  376 MISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 795
            ++SPFLTQRTKSKFV + P+K  ETL KYI  +++PVQYGG     + EF + + V+EVVVKP S  T+EIP  E    LVW++ VLGW+V+Y  EFVP+ EG+YTVIV K +K+   + P I ++FK  + GK+VLT+DN
Sbjct:  382 VLSPFLTQRTKSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVDDTEF-SNETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGP-IRNSFKNSQAGKIVLTVDN 520          
BLAST of CB290998 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 67/141 (47.52%), Postives = 94/141 (66.67%), Query Frame = -3
Query:  376 MISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 795
            M SPFLTQRTKSKFV S    +AETL+K+I PE +PVQYGGLSR  + +     P +E  +K   K  ++I   E  + + W++ V GWD+ Y AEFVP+AE SY ++V K +K+  TDE  +C++F   E GK++L++DN
Sbjct:  248 MFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDE-AVCNSFTTVEAGKLILSVDN 387          
The following BLAST results are available for this feature:
BLAST of CB290998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL1_ARATH3.468e-4666.17Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL2_ARATH3.834e-4569.92Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL3_ARATH6.122e-4358.04Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH1.364e-4257.64Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL4_ARATH1.047e-3453.19Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL6_ARATH1.415e-3147.52Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290998 ID=CB290998; Name=CB290998; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTAACATAATACACCATCAAATTTACACAAATTCTTCTG
AGCAGAGTATATCAAGATTCAAGAATAACAACAAACCCTTTGTCCAGATT
CCACGCCGTGTCCGGTCTCCACCCATAGCATCCAACAAAACCAAACCACC
AAAAATCCCCAAAAACTAATACAAAAAAATAATATAAATGAAATCCCCCA
AAGTTTAAATTTTTTTATAAAATTAAATTCCAACAAATAAAATAAAATAA
CCTCTATCATAGAAATAAAAGAACCCTTTTCTTATTGTGCAATGCAATGG
CCTTCATAGATTGATTTAATCAGAGGAGGGCTTGGTCTTGGACCTATATA
GGAGCTTCTTCTTCTTCGAGGACTGGTTATCAATGGTGAGAACCACCTTG
CCGGGTTCGCCAATTTTGAATGTGTCGCAAATGACCGGTTCATCAGTTGG
CGCGACCTTCCTAGTCTTTGACACTATTACAGTGTAGCTGCCTTCGGCAC
TAGGCACAAATTCAGCTCCATAGCTCACATCCCAACCCAAAACTCGGAGT
TCCCACACAAGAATACTTCTCTCAGTAACGGGGATTTCAACAGTGTATTT
GCTAGCTGGCTTGACGACAACCTCAGTAACAGGGTCAGTTGTTGTAAATT
CCTGCTCACCCTCCCTGCTCAATCCACCATACTGAACTGGTACTTGCTCA
GGAGCTATGTATTTGAAAAGGGTTTCTGCAGATTTAGATGGTCCTGAAAA
TACAAACTTGCTCTTTGTCCTTTGTGTCAGGAAAGGACTAATCATTCTGT
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