CB290999

Overview
NameCB290999
Unique NameCB290999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.679e-37
Identity = 70/94 (74.47%), Postives = 84/94 (89.36%), Query Frame = 1
Query:  502 PEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQSNELYH 783
            PE+V IWGIPLL DDRSD +LLKFLRAR+FKVKD+F M+KNT++WR EF ID ++EEDL +DLDKVVFMHG D+EGHPVCYNV+GEFQ+ ELY+
Sbjct:  147 PEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYN 240          
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.349e-31
Identity = 73/145 (50.34%), Postives = 94/145 (64.83%), Query Frame = 1
Query:  349 EDGAKTVEAIEETIXXXXXXXXXXXXXXXXXXXXXXXXSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDL-GNDLDKVVFMHGVDKEGHPVCYNVFGEFQSNELY 780
            E+  KTVEA+EE+I                              +  A V PE+V IWGIPLL D+RSD ILLKFLRARDFKVK+AFTM+KNTV+WR E  ID ++ EDL G++ +K+VF HGVDK+GH V Y+ +GEFQ+ E++
Sbjct:  321 EEETKTVEAVEESIVSITLP------------------------ETAAYVEPEEVSIWGIPLLEDERSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLEGSEFEKLVFTHGVDKQGHVVIYSSYGEFQNKEIF 441          
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1
Query:  508 KVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQSNELY 780
            K  IWG+PLL DDR+D +LLKFLRARDFK ++A++M+  T++WR +F I+ +L+E+LG+DLDKVVFM G DKE HPVCYNV+GEFQ+ +LY
Sbjct:  324 KTSIWGVPLLKDDRTDVVLLKFLRARDFKPQEAYSMLNKTLQWRIDFNIEELLDENLGDDLDKVVFMQGQDKENHPVCYNVYGEFQNKDLY 414          
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.523e-30
Identity = 75/149 (50.34%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  340 TVDEDGAKTVEAIEETIXXXXXXXXXXXXXXXXXXXXXXXXSDEQTKDKEAE-VPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEE-DLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQSNELY 780
            + +EDG KTVEAIEE+I                          E     EAE V PE+V IWG+PLL D+RSD IL KFLRARDFKVK+A TM+KNTV+WR E  ID ++E  +  ++ +K+VF HGVDKEGH V Y+ +GEFQ+ EL+
Sbjct:  195 SAEEDGTKTVEAIEESIVSVSPPESAVAPVVV-----------ETVAVAEAEPVEPEEVSIWGVPLLQDERSDVILTKFLRARDFKVKEALTMLKNTVQWRKENKIDELVESGEEVSEFEKMVFAHGVDKEGHVVIYSSYGEFQNKELF 332          
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  469 EQTKDKEAEVPPEKVFIWGIPLLG-DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLG-NDLD-KVVFMHGVDKEGHPVCYNVFGEFQSNELY 780
            ++ K+K +    +   +WG+ LLG DD++D ILLKFLRARDFKV D+  M++  + WR EF  + + EEDLG  DL+ KV +M G DKEGHPVCYN +G F+  E+Y
Sbjct:   53 QELKEKLSASSSKASSMWGVSLLGGDDKADVILLKFLRARDFKVADSLRMLEKCLEWREEFKAEKLTEEDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMY 159          
BLAST of CB290999 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  481 DKEAEVPPEKVFIWGIPLL---GDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQSNELY 780
            + E E   + + +WG+PLL   G + +D ILLKFLRARDFKV +AF M+K T++WR +  ID++L E+ G DL    +M+GVD+E HPVCYNV     S ELY
Sbjct:  193 EDEDESVDKDIELWGVPLLPSKGAESTDVILLKFLRARDFKVNEAFEMLKKTLKWRKQNKIDSILGEEFGEDLATAAYMNGVDRESHPVCYNV----HSEELY 291          
The following BLAST results are available for this feature:
BLAST of CB290999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL3_ARATH1.679e-3774.47Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL2_ARATH2.349e-3150.34Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL5_ARATH5.233e-3163.74Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL1_ARATH1.523e-3050.34Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL6_ARATH1.380e-2350.47Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL4_ARATH2.603e-2250.49Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ah01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290999 ID=CB290999; Name=CB290999; organism=Citrus sinensis; type=EST; length=786bp
GCTCTAATTAGTCGCCAAAACCCAATCATCATCAGCAAGTCTGCTTCATC
ATCAGCCATGGCCGAGGACACGCAAAAGCCAGCTGCAGCCGAGGAAGTTG
CGGTGGAGAAACCAGTCGCTGAGAAGGAGAAAGAACAGGCACCTGCTCCT
GTACCTGAGCCTGAAGCGCCCCCAAAAGAAAAAGAAGCAGCAGCAGCAGC
AGAAGAACAAGTTGTCAAGGCCGAGGAGCCAAAAACTGGCGAAGAAGAGA
AGAAACCCGCTGTCGAAGTTGAATTGAAAGCTCCAGAATCAGAACCTGCT
GCACCGGCTGAAGTGGAGGTTGTTGTTGAGAAAGTGGCGACCGTTGATGA
GGACGGAGCCAAGACTGTGGAGGCTATTGAAGAAACCATAGTAGCCGCCA
AGCCGGAGGTGGAAGAGGCTGAAGTAACTACTACTAAAAAAGAAGCTGAA
GTAGCTGCTCCATCTGATGAGCAAACCAAAGACAAAGAGGCGGAGGTTCC
TCCTGAGAAGGTTTTCATTTGGGGGATCCCACTTCTTGGAGATGATAGGA
GTGACACCATCCTCTTGAAGTTCCTCAGAGCCAGGGATTTCAAGGTGAAG
GATGCTTTCACCATGATCAAGAACACCGTCCGCTGGCGAAACGAGTTTGG
AATCGATGCTGTCCTTGAAGAAGACCTTGGTAATGACTTGGATAAAGTGG
TGTTTATGCATGGAGTCGATAAAGAAGGTCACCCCGTGTGCTACAATGTG
TTTGGTGAATTCCAGAGCAACGAGTTGTACCACAAT
back to top