CB291004

Overview
NameCB291004
Unique NameCB291004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.056e-42
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = -3
Query:  189 LLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 596
            LLVFLD KV E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+TGGP+AA +YAA E+K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY + GYLPLVP+DDI KA+++
Sbjct:   73 LLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.618e-17
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = -3
Query:  189 DLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG-----------------PRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 599
            ++L ++D+KVD +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   81 EVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.299e-16
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  192 DLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGP---------------RAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFK 599
            +LL+F+D+KV+ +  + + H P L KR + Q  ++ + A + A  + SE Q  G                        ++++ +    +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GY V  YLPL+P + IAK F+
Sbjct:   79 ELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = -3
Query:  195 DLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 599
            +LL + D+KV E     D H P   K+V+SQ           A+++VSE +  G         ++++      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:   45 ELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.756e-13
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = -3
Query:  195 FLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 587
            F+DK VD +    D   PP+ K+V++Q +S+ + A +   ++ S     G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   69 FVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  195 DLLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVHS--LIETASQKAQNLVSEAQTGGPRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 599
            DLL FLD+KV E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y    ++ +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   94 DLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYT--RYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB291004 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  195 DLLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVHS--LIETASQKAQNLVSEAQTGGPRAAVHYAAAEFKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 599
            DLL FLD+KV E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y    ++ +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   94 DLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYT--RYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
The following BLAST results are available for this feature:
BLAST of CB291004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1736_ARATH1.056e-4260.29REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH2.618e-1737.01REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI1.299e-1632.45Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU9.312e-1535.56Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR1.756e-1332.82Small rubber particle protein OS=Hevea brasiliensi... [more]
Y5513_ORYSJ3.312e-1232.64REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI3.312e-1232.64REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291004 ID=CB291004; Name=CB291004; organism=Citrus sinensis; type=EST; length=601bp
CATACTGCCCCTACGCGGCCACACCTTCAAGCCTAAAATTTTGCAAACCC
TACCACTACATGAAGCAAACTCCTCAGACAAAAAGTAAATTCTTAGTCAG
AATCTGAGCTTGAATCCTTTTCCTTTGCATCTTCTTTCTTTGGAGCATCT
TCTTTCTCTGGAGCATCTTCTTTCTTGGGAGCTTCACTCTGCTTAAAAGC
TTTGGCTATGTCATCAATGGGAACCAAAGGAAGATAGCCAAAGACTGGGT
AACCCTTCTTCGTCATCTCCACGACAAGATGGTTATACTTCTTGGACCAC
TGTGCAGCTGTGGGAACAGCCATATCTGCCATTGTGTGGAACAATGCATA
GTGGTTTAGTTTATACCATGCTTTCACGGAATTTGTTACCAGAAGGTGTT
TAAACTCAGCAGCAGCATAATGGACAGCTGCTCGAGGCCCCCCGGTTTGG
GCCTCACTCACAAGATTTTGAGCTTTCTGTGATGCTGTTTCAATTAGACT
ATGTACTTGGCTGGCAACCCGCTTGGCCAAAGGGGGAGCGTGCTCGTCAA
ACTTGCGTGAAGCCTCATCCACCTTCTTATCAAGAAAAACGAGGAGATCA
T
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