CB291007

Overview
NameCB291007
Unique NameCB291007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291007 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 65/218 (29.82%), Postives = 93/218 (42.66%), Query Frame = 3
Query:  135 TLDPDPQFGVSSKDITISQNPAISTRLYLPKLTQPHQKLAIL--------------VYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNY 743
            T + +P  GV S D+ I +   + +R+Y P      Q  +IL              ++FHG +F   SA S +       LV   + + VS+ YR APE   P AY+D W A  WV                        N   WL +  D +   F+ GDSSGGNI HN+A++AG+          +G+ +LG  L +P F G+    SE      Y
Sbjct:   54 TANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV------------------------NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE----------SGIDVLGNILLNPMFGGNERTESEKSLDGKY 237          
BLAST of CB291007 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 69/243 (28.40%), Postives = 104/243 (42.80%), Query Frame = 3
Query:   27 MAASTNKEVTKELLPLIRVFKDGSVE---RLMDSAYVPPTLDPDPQFGVSSKDITISQNPAISTRLYLPKLTQPHQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFERF-FIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNY 743
            +A   +++V     PL  VF    V+    L+   Y P +L    + G      T+     +ST   +P          +L++FHG +F   SA S +   +   LV+   V+ VS++YR +PE+  P AY+D W A  WV S                          WL +  D   + ++ GDSSGGNI HN+A++A ++          GV++LG  L HP F G     SE      Y
Sbjct:   45 LAEFLDRKVPANSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHG------TLELTKPLSTTEIVP----------VLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS------------------------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE----------GVKVLGNILLHPMFGGQERTQSEKTLDGKY 237          
BLAST of CB291007 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 62/213 (29.11%), Postives = 95/213 (44.60%), Query Frame = 3
Query:  150 PQFGVSSKDITISQNPAISTRLY-----------LPKLTQP----------HQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSE 722
            P  GVSS D  I Q+  +  R+Y              +T+P           +   ++++FHG +F   SA S +        V  S+ + VS+ YR APE+  P AY+D W A +WV S                        +P++ + GD + R F+ GDSSGGNI H++A++A D+          GV++ G  L +  F G+    SE
Sbjct:   59 PLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS------------------------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE----------GVKVCGNILLNAMFGGTERTESE 237          
BLAST of CB291007 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 63/205 (30.73%), Postives = 92/205 (44.88%), Query Frame = 3
Query:  147 DPQFGVSSKDITISQNPAISTRLYLPK----------LTQP--HQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSE 722
            +P  GV S D+ I +   + +R+Y P           L  P   + + ++V+FHG +F   SA S +       LV     + VS+ YR APE   P AY+D WA  +WV                        N   WL +  D + R F+ GDSSGGNIVHN+A++A +          + + +LG  L +P F G+    SE
Sbjct:   58 NPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV------------------------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE----------SRIDVLGNILLNPMFGGTERTESE 228          
The following BLAST results are available for this feature:
BLAST of CB291007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L1_ARATH3.019e-1829.82Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.359e-1728.40Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ9.711e-1729.11Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH1.268e-1630.73Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291007 ID=CB291007; Name=CB291007; organism=Citrus sinensis; type=EST; length=794bp
GCCTCGTGCCGCTCTCAGAAATTACAATGGCTGCTTCAACAAACAAAGAA
GTAACCAAAGAGCTCCTCCCACTGATCAGAGTCTTCAAAGATGGGTCAGT
TGAGCGGCTCATGGATTCAGCCTACGTGCCTCCAACGCTTGACCCGGATC
CTCAATTCGGGGTCTCATCAAAAGACATAACCATCTCTCAAAACCCCGCC
ATATCCACTCGCCTCTACCTCCCAAAACTCACCCAGCCCCATCAAAAACT
CGCCATTTTGGTCTACTTCCACGGCAGCGCCTTCTGCATGGAGTCTGCTT
TCTCATTTCTTCAGCACAGATACCTCAACACCTTGGTCTCTCAGTCTCAA
GTACTCGCAGTCTCCATTGAATACAGGCTCGCCCCAGAATACCTTCTTCC
CGCAGCATATGAAGACTGCTGGGCTGCTTTTCAATGGGTCGCTTCTCATC
GTAACCGTAACAGTATCAATCATCATGATCCTGATCATCAAAACCACTCC
AATATTATTAACAACAAGGAGCCCTGGTTATTAAACCACGGAGATTTTGA
GAGATTCTTTATTGGTGGTGACAGCTCCGGAGGCAATATAGTTCATAACA
TAGCTATGAAAGCGGGTGATGATGATCAAGAGTCTTTATTGAAGGAGGGT
ACTGGTGTTCGGATTTTAGGAGCATTTCTAGGGCATCCTTACTTCTGGGG
CTCCGTTCCAGTCGGTTCAGAATCAGATGGTAGTGATAATTATGATCAGA
AGAAGTGTTTGGGCTATTTGATTTGGGAATTTGTCTATCCAGCG
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