CB291009

Overview
NameCB291009
Unique NameCB291009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 64/217 (29.49%), Postives = 101/217 (46.54%), Query Frame = 1
Query:  208 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPNEIVGFYES----ISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFI 798
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R++    +FF + S+LM  VK  KDPR ++H+G W  KI     + +  F++P    G++ S    +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  N FFI + LIL  +
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPG---GYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINLILCVV 250          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.207e-16
Identity = 54/159 (33.96%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPNEIVGFYES----ISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFI 798
            AV R++    +FF   S+LM+ VK  KDPR ++H+G W  KI     + +  F++P    G + +    I   G+               H WNE+WV   E+     WY ALL V+ + Y+L+  F+GLL+ ++T P G  C  N FFI   LIL  +
Sbjct:   96 AVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPG---GHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDG--CTENKFFISFNLILCVV 249          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.421e-16
Identity = 63/217 (29.03%), Postives = 100/217 (46.08%), Query Frame = 1
Query:  208 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPNEIVGFYES----ISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFI 798
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R++    +FF + S+LM  VK  KD R ++H+G W  KI     + +  F++P    G++ S    +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  N FFI + LIL  +
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPG---GYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINLILCVV 250          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.211e-14
Identity = 65/225 (28.89%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  202 SARIAYCGLFALSLIVSWIL--REVAAPLMEKLPWINHFHKTPSR----------------EWFETDAVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPNE--IVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ------FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFI 798
            S RI Y  LF LS I +WI+  ++V+  LM+    +  +H T  R                 W E   V+R+     LF   LS+  +GV + KDPR SLH+G W +K+I      +  FF+ N   I   +  I   G+               + WN++WVG  E+      F    L+  +++        + L+FH++T    DC L+ FFI   L LA +
Sbjct:   43 STRITYAILFFLSSIAAWIMLDKDVSKGLMK----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVSSSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNSFFIGASWSWIGLVGAVLFMIVQFILLVDFAYSWNDSWVGKLEEGSKCAGFGSYRLISATVMLMAFVITLTVLMFHFYT--NGDCKLSNFFIGFNLALALL 260          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC3_MOUSE (Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.896e-13
Identity = 47/151 (31.13%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLP-NEIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLI 786
            AV R+     +FF    +LM+ VK  KDPR ++H+G W  KI     + I  F++P       +      G+               H WNE WV   E+     WY ALL  + + Y+L+  F+ LL+ ++T    DC  N  FI + LI
Sbjct:   97 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYT-KPDDCTENKVFISLNLI 246          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC1_BOVIN (Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPN---EIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLIL 789
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      + I  FF+P      V FY  +   G+               H WNE+WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPA-SCAENKAFISVNMLL 239          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC1_PONAB (Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPN---EIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLIL 789
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      + I  FF+P      V FY  +   G+               H WNE+WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYTHPA-SCSENKAFISVNMLL 239          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC1_HUMAN (Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPN---EIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLIL 789
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      + I  FF+P      V FY  +   G+               H WNE+WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYTHPA-SCSENKAFISVNMLL 239          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC1_MOUSE (Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPN---EIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLIL 789
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      + I  FF+P      V FY  +   G+               H WNE+WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPA-SCAENKAFISVNMLL 239          
BLAST of CB291009 vs. ExPASy Swiss-Prot
Match: SERC1_RAT (Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  349 AVLRVTLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLEIFMFFLPN---EIVGFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLIL 789
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      + I  FF+P      V FY  +   G+               H WNE+WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIILFFVYYTHPA-SCSENKAFISVNMLL 239          
The following BLAST results are available for this feature:
BLAST of CB291009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SERC3_PONAB4.447e-1729.49Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_BOVIN2.207e-1633.96Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERC3_HUMAN6.421e-1629.03Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERIC_MONBE1.211e-1428.89Probable serine incorporator OS=Monosiga brevicoll... [more]
SERC3_MOUSE3.896e-1331.13Serine incorporator 3 OS=Mus musculus GN=Serinc3 P... [more]
SERC1_BOVIN2.525e-1231.17Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=... [more]
SERC1_PONAB3.298e-1231.17Serine incorporator 1 OS=Pongo abelii GN=SERINC1 P... [more]
SERC1_HUMAN3.298e-1231.17Serine incorporator 1 OS=Homo sapiens GN=SERINC1 P... [more]
SERC1_MOUSE4.307e-1231.17Serine incorporator 1 OS=Mus musculus GN=Serinc1 P... [more]
SERC1_RAT5.625e-1231.17Serine incorporator 1 OS=Rattus norvegicus GN=Seri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291009 ID=CB291009; Name=CB291009; organism=Citrus sinensis; type=EST; length=802bp
GGCGGTCTCTCCTAATATTCTTCGCTTAGCGCTTGCGATCATCGCCTTTT
CTATTTCACTTTCCCTTTCTCCTTCAAATTCAATCAAATATCCCAGTTTG
TGAGAGAAGAGAAGATGTGGGCGGCGTCTTGTCTTGCGTCGTGCTGTGCG
GCGTGCGCGTGTGACGCGTGCCGCTCGGCTGTGTCGGGGATCAGCAGGAG
GTCAGCTAGGATTGCTTACTGCGGGCTGTTTGCTCTCTCTCTGATCGTTT
CGTGGATTCTTCGTGAAGTCGCCGCTCCGCTCATGGAGAAGCTCCCTTGG
ATTAATCATTTTCATAAGACACCTAGCAGGGAGTGGTTTGAAACTGATGC
TGTGCTGCGAGTTACCTTGGGAAATTTTCTCTTTTTCACTATTTTGTCAA
TTTTAATGGTTGGTGTGAAAAATCAGAAAGATCCCCGTGATAGCTTGCAC
CATGGTGGATGGATGATGAAAATTATTTGTTGGTGCCTTCTGGAGATCTT
TATGTTTTTCCTTCCAAATGAGATTGTCGGCTTCTATGAGTCGATATCAA
AGTTTGGCTCGGGTTTGTTTCTTCTTGTTCAAGTTGTCCTTTTATTGGAC
TTTGTTCACAGATGGAATGAGACGTGGGTTGGATATGATGAGCAGTTCTG
GTATGTTGCCCTATTGGTTGTTTCTCTTGTTTGTTACGTGCTGACATTTG
GCTTCTCGGGACTTCTTTTCCATTGGTTCACACCATCAGGGCAGGATTGT
GGGCTCAATACATTCTTCATTGTTATGACCTTGATTCTTGCATTTATCTT
CG
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