CB291016

Overview
NameCB291016
Unique NameCB291016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291016 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.793e-34
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = -2
Query:   48 PRRMSTGFSEVFAFSGPPPHRINGRLAMIGFLAPLGVEISKVQDVFAHLSDGGVAWFLGTSVLFTVASLVPFFKGVSVDFKSDGFMTSDPHSRNGRFAILALVFWAFPDFVKGGPLV 398
            P +MST FS++ AFSGP P RINGRLAMIGF+A +GVEI+K Q +   LS GGVAWFLGTSVL ++ASL+PFF+GVSV+ KS   M+SD    NGR A+L LV  AF +FVKG  LV
Sbjct:   80 PPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB291016 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.799e-26
Identity = 54/108 (50.00%), Postives = 80/108 (74.07%), Query Frame = -2
Query:   48 EVFAFSGPPPHRINGRLAMIGFLAPLGVEISKVQDVFAHLSDGGVAWFLGTSVLFTVASLVPFFKGVSVDFKSDGFMTSDPHSRNGRFAILALVFWAFPDFVKGGPLV 371
            ++F+F G  P RINGR AMIGF+A +GVE++  +DVF+ + +GGV WFL TS +  +A+L+P ++G+S + K++GF  SD    NGRFA++ LV  AF ++VKGGPL+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB291016 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.711e-21
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = -2
Query:   48 EVFAFSGPPPHRINGRLAMIGFLAPLGVEISKVQDVFAHLS--DGGVAWFLGTSVLFTVASLVPFFKGVSVDFKSDGFMTSDPHSRNGRFAILALVFWAFPDFVKGGPLV 371
            +  AFSGP P RINGRLAM+GF+A L VE ++   +   +     G+AWFL T+ +F+VASL+P  +G SV+ KS G  ++D    NGRFA+L LV  A  +F+ G P V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB291016 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.664e-18
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = -2
Query:   48 RMSTGFSEVFAFSGPPPHRINGRLAMIGFLAPLGVEISKVQDVFAHLSDG-GVAWFLGTSVLFTVASLVPFFKGVSVDFKSDGFMTSDPHSRNGRFAILALVFWAFPDFVKGGPLV 392
            + ST   +  AFSGP P RINGRLAM+GF+  L VE  +   + + L  G G AWF  T  + ++ASLVP  +G S + ++   M ++    NGRFA+L LV  A  + + G P +
Sbjct:   55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB291016 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-18
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = -2
Query:   48 RMSTGFSEVFAFSGPPPHRINGRLAMIGFLAPLGVEISKVQDVFAHLSDG-GVAWFLGTSVLFTVASLVPFFKGVSVDFKSDGFMTSDPHSRNGRFAILALVFWAFPDFVKGGPLV 392
            + ST   +  AFSGP P RINGRLAM+GF+  L VE  +   + + L  G G AWF  T  + ++ASLVP  +G S + ++   M ++    NGRFA++ LV  A  + + G P +
Sbjct:   50 KASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
The following BLAST results are available for this feature:
BLAST of CB291016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA2.793e-3463.25Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.799e-2650.00Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.711e-2147.27High molecular mass early light-inducible protein ... [more]
ELI9_HORVU3.664e-1840.52Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU4.786e-1839.66Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291016 ID=CB291016; Name=CB291016; organism=Citrus sinensis; type=EST; length=399bp
TAGTTAAAACCTTTAAAAATCTACAGATCTAAACAAAATTAAGCTTAAAC
AAGGGGGCCACCCTTAACAAAATCGGGGAAAGCCCAAAAAACAAGGGCCA
GGATAGCAAACCTCCCATTCCGCGAGTGAGGATCCGAAGTCATGAACCCA
TCCGATTTAAAATCCACGCTGACACCTTTAAAAAAAGGAACCAGGGACGC
AACCGTGAACAAAACACTGGTCCCCAAAAACCAGGCAACCCCACCGTCTG
ATAAATGGGCAAAAACATCCTGAACCTTGGATATCTCCACCCCCAATGGA
GCCAAGAACCCAATCATCGCAAGCCTCCCGTTTATTCTGTGGGGGGGCGG
CCCGCTGAACGCAAACACCTCAGAGAACCCCGTGCTCATCCGCCTCGGG
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