CB291017

Overview
NameCB291017
Unique NameCB291017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.662e-44
Identity = 87/115 (75.65%), Postives = 103/115 (89.57%), Query Frame = 1
Query:   10 RMTTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVTVESKSDGFMTSDADLWNGRVAMLGLVALAFTEFVKGGTLV 354
            +M+T FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GV+VESKS   M+SDA+ WNGR+AMLGLVALAFTEFVKG +LV
Sbjct:   82 KMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.014e-35
Identity = 67/108 (62.04%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   31 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVTVESKSDGFMTSDADLWNGRVAMLGLVALAFTEFVKGGTLV 354
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G++ E+K++GF  SDA++WNGR AM+GLVALAFTE+VKGG L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.188e-30
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   31 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVTVESKSDGFMTSDADLWNGRVAMLGLVALAFTEFVKGGTLV 354
            +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G +VESKS G  ++DA+LWNGR AMLGLVALA TEF+ G   V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.016e-27
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   10 RMTTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVTVESKSDGFMTSDADLWNGRVAMLGLVALAFTEFVKGGTLV 354
            + +T   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G + E ++   M ++A+LWNGR AMLGLVALA TE + G   +
Sbjct:   55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.327e-27
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   10 RMTTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVTVESKSDGFMTSDADLWNGRVAMLGLVALAFTEFVKG 342
            + +T   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G + E ++   M ++A+LWNGR AM+GLVALA TE + G
Sbjct:   50 KASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CB291017 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   28 SEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVTVESKSD--GFMTSDADLWNGRVAMLGLVALAFTEFVKG 342
            +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DA++ NGR AM+G  A+   E ++G
Sbjct:   68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CB291017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.662e-4475.65Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.014e-3562.04Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.188e-3060.00High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.016e-2752.59Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.327e-2753.57Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA8.923e-1649.53Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291017 ID=CB291017; Name=CB291017; organism=Citrus sinensis; type=EST; length=441bp
AGCACGATGCGGATGACCACGGGGTTCTCTGAGGTGTTTGCGTTCAGCGG
GCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGG
CTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTA
TCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGT
TGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCACCGTGGAGTCTAAATCGG
ATGGGTTCATGACTTCGGATGCTGACTTGTGGAATGGGAGGGTTGCTATG
CTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCT
TGTTTAAGCTTAATTTTGTTTAGATCTGTACATCTGTATTTTTTTTAACT
ACTTAATGTATGAGATCCTACTGTAATTAAATCTCTATTTC
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