CB291031

Overview
NameCB291031
Unique NameCB291031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.227e-76
Identity = 145/160 (90.62%), Postives = 154/160 (96.25%), Query Frame = -2
Query:  273 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIPLD 752
            PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTK IK +G+I+LDDVIEIAK+M+ RSMAK+L+GTVKEIL TCVSVGCTVDGKDP+DLQQEI DGDVEIPLD
Sbjct:    7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.444e-75
Identity = 140/158 (88.61%), Postives = 151/158 (95.57%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            PSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK K IK NGNI+ DDVIEIAK+MRPRS+AK+LSGTVKEILGTCVSVGCTVDGKDP+DLQ+EI  GD++IP
Sbjct:    7 PSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 5.486e-75
Identity = 139/158 (87.97%), Postives = 151/158 (95.57%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            PSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK K IK NGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+D+QQEI DG+VEIP
Sbjct:    7 PSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.222e-74
Identity = 138/158 (87.34%), Postives = 151/158 (95.57%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            PSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK K IK NGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+DLQQEI +G++EIP
Sbjct:    7 PSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.824e-63
Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = -2
Query:  279 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 743
            VV+V VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK K IK  G++T+ D+IEIA+VMRPRS AKDL+   KEILGT VSVGC VDGKDPRD+   I DG +EIP
Sbjct:    1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 110/158 (69.62%), Postives = 137/158 (86.71%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            P++V  +++R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK K +  +GN++LD++IE+A+ MR +S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIP
Sbjct:    7 PNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.737e-57
Identity = 105/158 (66.46%), Postives = 133/158 (84.18%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            P+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK K +K NG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    7 PTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.737e-57
Identity = 105/158 (66.46%), Postives = 133/158 (84.18%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            P+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK K +K NG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    7 PTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.799e-57
Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            P+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK K IK NGNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB291031 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.560e-56
Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = -2
Query:  279 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKTIKPNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 752
            P++V  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK K IK +GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    7 PNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of CB291031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL12_PRUAR2.227e-7690.6360S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH1.444e-7588.6160S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH5.486e-7587.9760S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH1.222e-7487.3460S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_CHLRE2.824e-6378.7160S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_SCHPO7.198e-5969.6260S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CAEEL6.737e-5766.4660S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR6.737e-5766.4660S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT8.799e-5767.7260S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE2.560e-5667.7260S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291031 ID=CB291031; Name=CB291031; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTGCATTAGAAAATTTAAATTTCAAAGACCCTATA
TACGCTTTTCTGAAGCATCATTCAACATAAGTCCACTAAATTAAACCTTA
CATCTCCTAAATTCCAATAATAAAGCACTCGTTTAAAGCTCGAATAATTG
GAGACATCCTCAAAATCCTTGTAAAGATCCAAAACTGATAATTAAAAAAA
AAGGCACTGATATATAAAGATAAAAACAAAAATTAAAATCTAAAATAGAC
CCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCGACATCACCATCA
GTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATCGACCGTACACCC
AACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGCCACTCAAATCCT
TAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCGATGACGTCATCG
AGGGTAATGTTGCCGTTGGGCTTGATGGTCTTGGTCTTCTTCCTGTCCCT
CTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGGCGGAGGGAACGA
CGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTGACGGTGACACGT
AAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTCCTCTCCGATTTT
CTTTGGGGAGAGACCGAGGGGACCGATCTTTGGGGCGAGGGAACTGGCGG
CTCCCACCTCGCCACCGGTCACGCGGACGTACACGTCCACCACTTGGCTC
GGG
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