CB291032

Overview
NameCB291032
Unique NameCB291032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.086e-80
Identity = 152/172 (88.37%), Postives = 157/172 (91.28%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            VVPMDQQPELLQKLSEG+FTLRIMYEQFQNILKMGPIGQVF MLPGFS+ELMPKGRE ESQAKIKRYMTMMDSMTNEELDSSNPKLM DSRIMRIARGSG QV EVM+M EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQ MSKVLP  MLKQIGG+GG   L +  G
Sbjct:  310 VVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG 481          

HSP 2 Score: 26.1794 bits (56), Expect = 1.086e-80
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  298 QNLMKQMGSTKD 333
            QNLMKQMGS KD
Sbjct:  474 QNLMKQMGSAKD 485          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 3.138e-74
Identity = 139/172 (80.81%), Postives = 153/172 (88.95%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            VVP DQQPELL+KLS+GNFTLRIMY+QFQNIL MGP+ +VF MLPG S+E+MPKG EKESQAKIKRYMTMMDSMTN+ELDSSNPK+ N+SR+MRIARGSG QVREVMEM EEYKRLAKIWSKMKGLKIPK G+MSALSRNMNAQ MSKVLP  MLKQIGG+GG   L +  G
Sbjct:  310 VVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMG 481          

HSP 2 Score: 23.483 bits (49), Expect = 3.138e-74
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  298 QNLMKQMGSTKD 333
            Q+LMKQMGS KD
Sbjct:  474 QSLMKQMGSGKD 485          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.293e-72
Identity = 138/172 (80.23%), Postives = 155/172 (90.12%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            VVPMDQQPELLQKLSEG+FTLRIMYEQFQ++LKMGP+G VF MLPGFS+E+MP+GREKESQAK KRYMTMMDSMT+EELDS+NPK++ +SRIMRIARGSG  V EVMEM EEYKRLAKI+SKMKGLKIPKKG+MS+LSRNMNAQ MSKVLP  MLKQIGG+GG   L +  G
Sbjct:  311 VVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMG 481          

HSP 2 Score: 26.1794 bits (56), Expect = 1.293e-72
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  298 QNLMKQMGSTKD 333
            QNLMKQMGS KD
Sbjct:  474 QNLMKQMGSAKD 485          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.413e-67
Identity = 125/172 (72.67%), Postives = 147/172 (85.47%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVF MLPGFSSELMPKG EKE QAKIKRYMT+MDSMT  ELDS+NPKLM +SRI+RIARGSG Q+R+V +M EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP  +LKQ+GG+GG   L +  G
Sbjct:  310 VMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.413e-67
Identity = 125/172 (72.67%), Postives = 147/172 (85.47%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVF MLPGFSSELMPKG EKE QAKIKRYMT+MDSMT  ELDS+NPKLM +SRI+RIARGSG Q+R+V +M EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP  +LKQ+GG+GG   L +  G
Sbjct:  310 VMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.757e-64
Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            VVP DQQPELL+ LS G FTLRIMY+QFQN+L MGP+ +VF MLPG  +E+MP+G EKESQA+IKRYMTMMDSMTNEELDSSNPK+ N+SRIMRIARGSG  VREVMEM EEYKRL  +W K+KGLK  +KG MSALS+N N+Q +SKVLP  MLKQIGG+ G   L +  G
Sbjct:  310 VVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMG 481          

HSP 2 Score: 23.483 bits (49), Expect = 9.757e-64
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  298 QNLMKQMGSTKD 333
            Q+LMKQMGS KD
Sbjct:  474 QSLMKQMGSGKD 485          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.104e-53
Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = -2
Query:  326 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTEL 826
            +VP DQQ EL+ KLSEG FTLR++YEQFQN+LKMGP+ Q+F MLPGFSSELMPKG+EK+S+ K KRYMT+MDSMT  ELDS+NPKLM +SRI+R+ARGSG +V++VMEM EEYKRLAK+WSK    K IP+ G+MSA +     Q M KV+P  +++Q+GG  G   L
Sbjct:  309 IVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQIFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEAL 472          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.390e-49
Identity = 104/172 (60.47%), Postives = 127/172 (73.84%), Query Frame = -2
Query:  311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826
            VVP D Q EL++ LS+GNFTLR MY+QFQ  L++ P+ Q+F MLPG S+E+MPKG  +ES+ K+KRYMTMMDSMTN+ELDS NPK+ N+SRIMRIARGSG  VREVMEM EEYKR+AK    MKG+KIPK G+            MSKV+P  MLKQ+GG+ G   L +  G
Sbjct:  310 VVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAK---TMKGIKIPKNGD------------MSKVIPPQMLKQMGGMSGLQSLMKQMG 465          

HSP 2 Score: 24.2534 bits (51), Expect = 5.390e-49
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  298 QNLMKQMGSTKD 333
            Q+LMKQMGS KD
Sbjct:  458 QSLMKQMGSAKD 469          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SRP54_GEOCY (Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 81/174 (46.55%), Postives = 108/174 (62.07%), Query Frame = -2
Query:  326 MDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMN--DSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA-------QPMSKVLPQGMLKQIGGVGGFTEL 817
            +D+  EL+ KL  G FTLR MYEQFQNI+KMGP  Q+  M+PGFS + M KG E+ES AK+KR MTMMDSM + ELD  N  KL +    R  R+ARGSG  VREV E+ ++Y   +    KM G+K   KG    L +N+N        Q M+K++   +L+Q+GG+ G   +
Sbjct:  311 LDENEELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQIIGMIPGFSPDFMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVARGSGTSVREVNELLKQYSNFSATVKKMGGIKGLFKG--GDLGKNVNPSQMAKLNQQMAKMMDPRVLQQMGGMSGLQNM 482          
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31
Identity = 74/172 (43.02%), Postives = 112/172 (65.12%), Query Frame = -2
Query:  326 MDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM---NDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QPMSKVLPQGMLKQIGGVGGFTEL 817
            +D    L++KL  G FTLR MYEQFQNI+KMGP  Q+  M+PGF ++ M KG E+ES A++K+ MT+MDSM ++ELDS++   +      RI R+ARGSG   R+V E+  +Y + A++  KM G+K + K G+MS  +S++  A   Q M+K++   +L  +GG+ G   +
Sbjct:  312 LDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483          
The following BLAST results are available for this feature:
BLAST of CB291032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
SR542_SOLLC1.086e-8088.37Signal recognition particle 54 kDa protein 2 OS=So... [more]
SR543_ARATH3.138e-7480.81Signal recognition particle 54 kDa protein 3 OS=Ar... [more]
SR541_SOLLC1.293e-7280.23Signal recognition particle 54 kDa protein 1 OS=So... [more]
SR542_HORVU8.413e-6772.67Signal recognition particle 54 kDa protein 2 OS=Ho... [more]
SR541_HORVU8.413e-6772.67Signal recognition particle 54 kDa protein 1 OS=Ho... [more]
SR542_ARATH9.757e-6470.93Signal recognition particle 54 kDa protein 2 OS=Ar... [more]
SR543_HORVU3.104e-5363.69Signal recognition particle 54 kDa protein 3 OS=Ho... [more]
SR541_ARATH5.390e-4960.47Signal recognition particle 54 kDa protein 1 OS=Ar... [more]
SRP54_GEOCY3.568e-3346.55Signal recognition particle 54 kDa protein OS=Geod... [more]
SRP54_RAT1.148e-3143.02Signal recognition particle 54 kDa protein OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291032 ID=CB291032; Name=CB291032; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTTTTTTTTCGTTACAAATTCCTTCATGCATTTTCTCTCCAA
CTAAATACATACAAAGAGGGCAAAAATTATATCAGGTGAAAAGCATGGAT
CTCTCAGGAAACATAATTGGCAAATCAGTTGGCAGAGAAATGCCACACTT
CAGAGCATGCCTTCTCTATAGGCGATCTTAACAAAAGGATTCAAGCCTTC
TCAACAGGCAATCTTGAAAAAAGAATTCAAGCTCTCACCATTGCAGTTAT
AGTCATTTATTTTATTGCTACTCACCCCCTCCAAACATGCCCATCATATC
TTTGGTAGAACCCATTTGTTTCATCAAGTTCTGTGAAACCACCCACTCCA
CCGATCTGCTTCAACATCCCCTGGGGAAGAACTTTGCTCATGGGTTGTGC
ATTCATATTTCGGGACAAAGCACTCATCTCACCCTTCTTAGGAATCTTAA
GACCCTTCATTTTGCTCCAGATCTTGGCAAGACGCTTATACTCTTCCGGC
ATCTCCATTACTTCTCTAACTTGACAACCAGATCCCCGTGCTATCCTCAT
AATTCGGGAATCATTCATGAGCTTAGGATTTGAACTATCCAACTCTTCAT
TTGTCATAGAATCCATCATTGTCATATAGCGCTTTATCTTTGCCTGGCTT
TCCTTTTCACGACCTTTCGGCATTAATTCAGAACTGAATCCTGGAAGCAT
ACAGAAAACCTGGCCAATAGGACCCATTTTCAGTATGTTTTGGAACTGCT
CATACATAATTCTCAATGTGAAGTTCCCTTCTGAAAGCTTTTGCAAAAGC
TCAGGCTGTTGATCCATTGGAACAACT
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