CB291032
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 1.086e-80 Identity = 152/172 (88.37%), Postives = 157/172 (91.28%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 VVPMDQQPELLQKLSEG+FTLRIMYEQFQNILKMGPIGQVF MLPGFS+ELMPKGRE ESQAKIKRYMTMMDSMTNEELDSSNPKLM DSRIMRIARGSG QV EVM+M EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQ MSKVLP MLKQIGG+GG L + G Sbjct: 310 VVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG 481 HSP 2 Score: 26.1794 bits (56), Expect = 1.086e-80 Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 298 QNLMKQMGSTKD 333 QNLMKQMGS KD Sbjct: 474 QNLMKQMGSAKD 485
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2) HSP 1 Score: 276.944 bits (707), Expect = 3.138e-74 Identity = 139/172 (80.81%), Postives = 153/172 (88.95%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 VVP DQQPELL+KLS+GNFTLRIMY+QFQNIL MGP+ +VF MLPG S+E+MPKG EKESQAKIKRYMTMMDSMTN+ELDSSNPK+ N+SR+MRIARGSG QVREVMEM EEYKRLAKIWSKMKGLKIPK G+MSALSRNMNAQ MSKVLP MLKQIGG+GG L + G Sbjct: 310 VVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMG 481 HSP 2 Score: 23.483 bits (49), Expect = 3.138e-74 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 298 QNLMKQMGSTKD 333 Q+LMKQMGS KD Sbjct: 474 QSLMKQMGSGKD 485
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 1.293e-72 Identity = 138/172 (80.23%), Postives = 155/172 (90.12%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 VVPMDQQPELLQKLSEG+FTLRIMYEQFQ++LKMGP+G VF MLPGFS+E+MP+GREKESQAK KRYMTMMDSMT+EELDS+NPK++ +SRIMRIARGSG V EVMEM EEYKRLAKI+SKMKGLKIPKKG+MS+LSRNMNAQ MSKVLP MLKQIGG+GG L + G Sbjct: 311 VVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMG 481 HSP 2 Score: 26.1794 bits (56), Expect = 1.293e-72 Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 298 QNLMKQMGSTKD 333 QNLMKQMGS KD Sbjct: 474 QNLMKQMGSAKD 485
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 8.413e-67 Identity = 125/172 (72.67%), Postives = 147/172 (85.47%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVF MLPGFSSELMPKG EKE QAKIKRYMT+MDSMT ELDS+NPKLM +SRI+RIARGSG Q+R+V +M EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LKQ+GG+GG L + G Sbjct: 310 VMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 8.413e-67 Identity = 125/172 (72.67%), Postives = 147/172 (85.47%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVF MLPGFSSELMPKG EKE QAKIKRYMT+MDSMT ELDS+NPKLM +SRI+RIARGSG Q+R+V +M EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LKQ+GG+GG L + G Sbjct: 310 VMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 9.757e-64 Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 VVP DQQPELL+ LS G FTLRIMY+QFQN+L MGP+ +VF MLPG +E+MP+G EKESQA+IKRYMTMMDSMTNEELDSSNPK+ N+SRIMRIARGSG VREVMEM EEYKRL +W K+KGLK +KG MSALS+N N+Q +SKVLP MLKQIGG+ G L + G Sbjct: 310 VVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMG 481 HSP 2 Score: 23.483 bits (49), Expect = 9.757e-64 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 298 QNLMKQMGSTKD 333 Q+LMKQMGS KD Sbjct: 474 QSLMKQMGSGKD 485
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.104e-53 Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = -2 Query: 326 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTEL 826 +VP DQQ EL+ KLSEG FTLR++YEQFQN+LKMGP+ Q+F MLPGFSSELMPKG+EK+S+ K KRYMT+MDSMT ELDS+NPKLM +SRI+R+ARGSG +V++VMEM EEYKRLAK+WSK K IP+ G+MSA + Q M KV+P +++Q+GG G L Sbjct: 309 IVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQIFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEAL 472
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 5.390e-49 Identity = 104/172 (60.47%), Postives = 127/172 (73.84%), Query Frame = -2 Query: 311 VVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQPMSKVLPQGMLKQIGGVGGFTELDETNG 826 VVP D Q EL++ LS+GNFTLR MY+QFQ L++ P+ Q+F MLPG S+E+MPKG +ES+ K+KRYMTMMDSMTN+ELDS NPK+ N+SRIMRIARGSG VREVMEM EEYKR+AK MKG+KIPK G+ MSKV+P MLKQ+GG+ G L + G Sbjct: 310 VVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAK---TMKGIKIPKNGD------------MSKVIPPQMLKQMGGMSGLQSLMKQMG 465 HSP 2 Score: 24.2534 bits (51), Expect = 5.390e-49 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 298 QNLMKQMGSTKD 333 Q+LMKQMGS KD Sbjct: 458 QSLMKQMGSAKD 469
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SRP54_GEOCY (Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33 Identity = 81/174 (46.55%), Postives = 108/174 (62.07%), Query Frame = -2 Query: 326 MDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMN--DSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA-------QPMSKVLPQGMLKQIGGVGGFTEL 817 +D+ EL+ KL G FTLR MYEQFQNI+KMGP Q+ M+PGFS + M KG E+ES AK+KR MTMMDSM + ELD N KL + R R+ARGSG VREV E+ ++Y + KM G+K KG L +N+N Q M+K++ +L+Q+GG+ G + Sbjct: 311 LDENEELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQIIGMIPGFSPDFMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVARGSGTSVREVNELLKQYSNFSATVKKMGGIKGLFKG--GDLGKNVNPSQMAKLNQQMAKMMDPRVLQQMGGMSGLQNM 482
BLAST of CB291032 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31 Identity = 74/172 (43.02%), Postives = 112/172 (65.12%), Query Frame = -2 Query: 326 MDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFCMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM---NDSRIMRIARGSGCQVREVMEMPEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QPMSKVLPQGMLKQIGGVGGFTEL 817 +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++ M KG E+ES A++K+ MT+MDSM ++ELDS++ + RI R+ARGSG R+V E+ +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+ G + Sbjct: 312 LDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483 The following BLAST results are available for this feature:
BLAST of CB291032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291032 ID=CB291032; Name=CB291032; organism=Citrus sinensis; type=EST; length=827bpback to top |