CB291033

Overview
NameCB291033
Unique NameCB291033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.096e-62
Identity = 120/143 (83.92%), Postives = 126/143 (88.11%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            NILKMGPIGQVF ML GFS+ELMPKGRE ESQAKIKRYMTMMD M+ EELDSSNPKLM DSRIMRIARG GRQV EVM+M+EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLP  MLK IGG+GG   L +  G
Sbjct:  339 NILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG 481          

HSP 2 Score: 23.8682 bits (50), Expect = 3.096e-62
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  297 QNLMKQMGFTKD 332
            QNLMKQMG  KD
Sbjct:  474 QNLMKQMGSAKD 485          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            NIL MGP+ +VF ML G S+E+MPKG EKESQAKIKRYMTMMD M+ +ELDSSNPK+ N+SR+MRIARG GRQVREVMEMLEEYKRLAKIWSKMKGLKIPK G+MSALSRNMNAQHMSKVLP  MLK IGG+GG   L +  G
Sbjct:  339 NILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMG 481          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.586e-54
Identity = 107/143 (74.83%), Postives = 124/143 (86.71%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            ++LKMGP+G VF ML GFS+E+MP+GREKESQAK KRYMTMMD M+ EELDS+NPK++ +SRIMRIARG GR V EVMEMLEEYKRLAKI+SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLP  MLK IGG+GG   L +  G
Sbjct:  340 SMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMG 481          

HSP 2 Score: 23.8682 bits (50), Expect = 3.586e-54
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  297 QNLMKQMGFTKD 332
            QNLMKQMG  KD
Sbjct:  474 QNLMKQMGSAKD 485          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.333e-52
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            N+LKMGPIGQVF ML GFSSELMPKG EKE QAKIKRYMT+MD M+  ELDS+NPKLM +SRI+RIARG GRQ+R+V +MLEEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP  +LK +GG+GG   L +  G
Sbjct:  339 NLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.333e-52
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            N+LKMGPIGQVF ML GFSSELMPKG EKE QAKIKRYMT+MD M+  ELDS+NPKLM +SRI+RIARG GRQ+R+V +MLEEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP  +LK +GG+GG   L +  G
Sbjct:  339 NLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 95/143 (66.43%), Postives = 113/143 (79.02%), Query Frame = -3
Query:  310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738
            N+L MGP+ +VF ML G  +E+MP+G EKESQA+IKRYMTMMD M+ EELDSSNPK+ N+SRIMRIARG GR VREVMEMLEEYKRL  +W K+KGLK  +KG MSALS+N N+Q +SKVLP  MLK IGG+ G   L +  G
Sbjct:  339 NMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMG 481          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 83/139 (59.71%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTEL 738
            N+LKMGP+ Q+F ML GFSSELMPKG+EK+S+ K KRYMT+MD M+  ELDS+NPKLM +SRI+R+ARG GR+V++VMEMLEEYKRLAK+WSK    K IP+ G+MSA +     Q M KV+P  +++ +GG  G   L
Sbjct:  338 NLLKMGPMSQIFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEAL 472          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.528e-35
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = -3
Query:  310 PIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 720
            P+ Q+F ML G S+E+MPKG  +ES+ K+KRYMTMMD M+ +ELDS NPK+ N+SRIMRIARG GR VREVMEMLEEYKR+AK    MKG+KIPK G+            MSKV+P  MLK +GG+ G   L +  G
Sbjct:  344 PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAK---TMKGIKIPKNGD------------MSKVIPPQMLKQMGGMSGLQSLMKQMG 465          

HSP 2 Score: 21.9422 bits (45), Expect = 1.528e-35
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  297 QNLMKQMGFTKD 332
            Q+LMKQMG  KD
Sbjct:  458 QSLMKQMGSAKD 469          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = -3
Query:  325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLM---NDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKHIGGVGGFTEL 738
            NI+KMGP  Q+  M+ GF ++ M KG E+ES A++K+ MT+MD M+ +ELDS++   +      RI R+ARG G   R+V E+L +Y + A++  KM G+K + K G+MS  +S++  A   Q M+K++   +L H+GG+ G   +
Sbjct:  338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483          
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = -3
Query:  325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLM---NDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKHIGGVGGFTEL 738
            NI+KMGP  Q+  M+ GF ++ M KG E+ES A++K+ MT+MD M+ +ELDS++   +      RI R+ARG G   R+V E+L +Y + A++  KM G+K + K G+MS  +S++  A   Q M+K++   +L H+GG+ G   +
Sbjct:  338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483          
The following BLAST results are available for this feature:
BLAST of CB291033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SR542_SOLLC3.096e-6283.92Signal recognition particle 54 kDa protein 2 OS=So... [more]
SR543_ARATH1.721e-5777.62Signal recognition particle 54 kDa protein 3 OS=Ar... [more]
SR541_SOLLC3.586e-5474.83Signal recognition particle 54 kDa protein 1 OS=So... [more]
SR542_HORVU6.333e-5269.93Signal recognition particle 54 kDa protein 2 OS=Ho... [more]
SR541_HORVU6.333e-5269.93Signal recognition particle 54 kDa protein 1 OS=Ho... [more]
SR542_ARATH1.614e-4766.43Signal recognition particle 54 kDa protein 2 OS=Ar... [more]
SR543_HORVU3.605e-3959.71Signal recognition particle 54 kDa protein 3 OS=Ho... [more]
SR541_ARATH1.528e-3557.66Signal recognition particle 54 kDa protein 1 OS=Ar... [more]
SRP54_RAT5.229e-2239.73Signal recognition particle 54 kDa protein OS=Ratt... [more]
SRP54_PONAB5.229e-2239.73Signal recognition particle 54 kDa protein OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291033 ID=CB291033; Name=CB291033; organism=Citrus sinensis; type=EST; length=740bp
TTTTTTTTTTTTTTTTTCGTTCAAATTCCTTCATGCATTTCCTATCCAAC
TAAATACATACAAAGAGGGCAAAAATTATATCTGGTGAAAAGCATGGATC
TCTCAGGAAACATAATTGGCAAATCAGTTGGTAAAGAAATGCCACACTTC
ATAGCATGCCTTCTCGATAGGCGATCTTAACAAAAGGATTCAAGCCTTCT
CAACAGGCAATCTTGAAAAAAGAATTCAACCTCTCACCATTGCAGCTATA
GTCATTTATTTTATTGCTACTCACCCCCTCCAAACATGCCCATCATATCT
TTGGTAAAACCCATTTGTTTCATCAAGTTCTGTGAAACCACCCACTCCAC
CGATATGCTTCAACATCCCCTGGGGAAGAACTTTGCTCATGTGTTGTGCA
TTCATATTTCGGGACAAAGCACTCATCTCACCCTTCTTAGGAATCTTAAG
ACCCTTCATTTTGCTCCAGATCTTGGCAAGACGCTTATACTCTTCCAGCA
TCTCCATTACTTCTCGAACTTGACGACCACATCCCCGTGCTATCCTCATA
ATTCGGGAATCATTCATGAGCTTAGGATTTGAACTATCCAACTCTTCCTT
TGACATACAATCCATCATTGTCATATAGCGCTTTATCTTTGCCTGGCTTT
CCTTTTCACGACCTTTCGGCATTAATTCAGAACTGAATCCTGAAAGCATA
CAGAAAACCTGGCCAATAGGACCCATTTTCAGTATGTTTT
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