CB291033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 3.096e-62 Identity = 120/143 (83.92%), Postives = 126/143 (88.11%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 NILKMGPIGQVF ML GFS+ELMPKGRE ESQAKIKRYMTMMD M+ EELDSSNPKLM DSRIMRIARG GRQV EVM+M+EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLP MLK IGG+GG L + G Sbjct: 339 NILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG 481 HSP 2 Score: 23.8682 bits (50), Expect = 3.096e-62 Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1 Query: 297 QNLMKQMGFTKD 332 QNLMKQMG KD Sbjct: 474 QNLMKQMGSAKD 485
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57 Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 NIL MGP+ +VF ML G S+E+MPKG EKESQAKIKRYMTMMD M+ +ELDSSNPK+ N+SR+MRIARG GRQVREVMEMLEEYKRLAKIWSKMKGLKIPK G+MSALSRNMNAQHMSKVLP MLK IGG+GG L + G Sbjct: 339 NILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMG 481
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 3.586e-54 Identity = 107/143 (74.83%), Postives = 124/143 (86.71%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 ++LKMGP+G VF ML GFS+E+MP+GREKESQAK KRYMTMMD M+ EELDS+NPK++ +SRIMRIARG GR V EVMEMLEEYKRLAKI+SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLP MLK IGG+GG L + G Sbjct: 340 SMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMG 481 HSP 2 Score: 23.8682 bits (50), Expect = 3.586e-54 Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1 Query: 297 QNLMKQMGFTKD 332 QNLMKQMG KD Sbjct: 474 QNLMKQMGSAKD 485
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 6.333e-52 Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 N+LKMGPIGQVF ML GFSSELMPKG EKE QAKIKRYMT+MD M+ ELDS+NPKLM +SRI+RIARG GRQ+R+V +MLEEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LK +GG+GG L + G Sbjct: 339 NLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 6.333e-52 Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 N+LKMGPIGQVF ML GFSSELMPKG EKE QAKIKRYMT+MD M+ ELDS+NPKLM +SRI+RIARG GRQ+R+V +MLEEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LK +GG+GG L + G Sbjct: 339 NLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47 Identity = 95/143 (66.43%), Postives = 113/143 (79.02%), Query Frame = -3 Query: 310 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 738 N+L MGP+ +VF ML G +E+MP+G EKESQA+IKRYMTMMD M+ EELDSSNPK+ N+SRIMRIARG GR VREVMEMLEEYKRL +W K+KGLK +KG MSALS+N N+Q +SKVLP MLK IGG+ G L + G Sbjct: 339 NMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMG 481
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39 Identity = 83/139 (59.71%), Postives = 107/139 (76.98%), Query Frame = -3 Query: 325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTEL 738 N+LKMGP+ Q+F ML GFSSELMPKG+EK+S+ K KRYMT+MD M+ ELDS+NPKLM +SRI+R+ARG GR+V++VMEMLEEYKRLAK+WSK K IP+ G+MSA + Q M KV+P +++ +GG G L Sbjct: 338 NLLKMGPMSQIFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEAL 472
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.528e-35 Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = -3 Query: 310 PIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLMNDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKHIGGVGGFTELDETNG 720 P+ Q+F ML G S+E+MPKG +ES+ K+KRYMTMMD M+ +ELDS NPK+ N+SRIMRIARG GR VREVMEMLEEYKR+AK MKG+KIPK G+ MSKV+P MLK +GG+ G L + G Sbjct: 344 PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAK---TMKGIKIPKNGD------------MSKVIPPQMLKQMGGMSGLQSLMKQMG 465 HSP 2 Score: 21.9422 bits (45), Expect = 1.528e-35 Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = -1 Query: 297 QNLMKQMGFTKD 332 Q+LMKQMG KD Sbjct: 458 QSLMKQMGSAKD 469
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22 Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = -3 Query: 325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLM---NDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKHIGGVGGFTEL 738 NI+KMGP Q+ M+ GF ++ M KG E+ES A++K+ MT+MD M+ +ELDS++ + RI R+ARG G R+V E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L H+GG+ G + Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483
BLAST of CB291033 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22 Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = -3 Query: 325 NILKMGPIGQVFCMLSGFSSELMPKGREKESQAKIKRYMTMMDCMSKEELDSSNPKLM---NDSRIMRIARGCGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKHIGGVGGFTEL 738 NI+KMGP Q+ M+ GF ++ M KG E+ES A++K+ MT+MD M+ +ELDS++ + RI R+ARG G R+V E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L H+GG+ G + Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSM 483 The following BLAST results are available for this feature:
BLAST of CB291033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291033 ID=CB291033; Name=CB291033; organism=Citrus sinensis; type=EST; length=740bpback to top |