CB291035

Overview
NameCB291035
Unique NameCB291035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.423e-41
Identity = 93/132 (70.45%), Postives = 94/132 (71.21%), Query Frame = -3 
Query:  209 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 604
            MAGRGKTL               GLQFPVGRIARFLK GKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S   A D+
Sbjct:    1 MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAEDD 132
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.051e-40
Identity = 91/125 (72.80%), Postives = 91/125 (72.80%), Query Frame = -3 
Query:  230 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 604
            MAGRGKTL               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G S
Sbjct:    1 MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.679e-40
Identity = 93/133 (69.92%), Postives = 95/133 (71.43%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK L               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G+  SK  +ED
Sbjct:    1 MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS--SKPTEED 131
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.569e-40
Identity = 91/134 (67.91%), Postives = 96/134 (71.64%), Query Frame = -3 
Query:  203 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S + AAD+DS
Sbjct:    1 MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSKAVAADDDS 134
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.968e-40
Identity = 90/133 (67.67%), Postives = 94/133 (70.68%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.968e-40
Identity = 90/133 (67.67%), Postives = 94/133 (70.68%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.736e-39
Identity = 92/133 (69.17%), Postives = 94/133 (70.68%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGKTL               GLQFPVGRIARFLK GKYA RVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPKK G S   +ADED
Sbjct:    1 MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS-KPSADED 132
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.962e-39
Identity = 89/133 (66.92%), Postives = 93/133 (69.92%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.962e-39
Identity = 89/133 (66.92%), Postives = 93/133 (69.92%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.527e-38
Identity = 86/133 (64.66%), Postives = 92/133 (69.17%), Query Frame = -3 
Query:  206 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 604
            MAGRGK +               GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133
The following BLAST results are available for this feature:
BLAST of CB291035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1_ARATH2.423e-4170.45Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH2.051e-4072.80Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_ARATH2.679e-4069.92Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A7_WHEAT4.569e-4067.91Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A3_ORYSJ5.968e-4067.67Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI5.968e-4067.67Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_ARATH1.736e-3969.17Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ2.962e-3966.92Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI2.962e-3966.92Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A8_ORYSI9.527e-3864.66Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291035 ID=CB291035; Name=CB291035; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTAAAAGCAATTCTTCTTCTATTAAGCAACTGATAGAAA
TTATACACAAACATAGCTATTTGAAATCCTACCTACAACCACAAAAACAA
CAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCACAATTA
ACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATGAGAATT
TAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTTCTTGGG
AAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAATGGTAA
CATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCCAATTGG
ATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGCATTTCC
AGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGGCGAGAT
AAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCTTTCAGG
AACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCTGCTACG
TGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCCGACCCG
CCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAAAGAGCA
AAAGGTTGAGACTTGG
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