CB291040

Overview
NameCB291040
Unique NameCB291040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291040 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.886e-29
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = -1 
Query:  197 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 559
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CB291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN7.886e-2954.55Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291040 ID=CB291040; Name=CB291040; organism=Citrus sinensis; type=EST; length=574bp
TTTTTTTTTTTTTTTTATTTAAAACCAAACTTTAGATAGGAAGGACACGT
AATACAAATAGCATTAACAAAACGACAAGGACACGTTGCGAAATCCAAAA
CGAAACGACACTATCTACAGACTACAGGCAACTCATCCGGTGAGTTGGTG
ACCCATCACATTCATTTACATCGCTGTAGCGTATCATCCACTAGTGATGA
TGCTTGCTCCTAGTCTCCCCACTGTAAAGCCAGTCATAAACAGTGGGAGA
GTTAGGATGTGTGGGCTTGTCAAAGACCTCTGCACCGATACCCCTAGTAG
CAAGGTTGCTACCGGGGTGAAACACGCTCCTCCACACGTTGTCCTTACGC
GCCGACAGCGGCGTCGTCGGCGTCACTGGCGTCGACGGTGCCCCTGGACT
CGCTGGCATTGACAGAGACCTCTGGAACTTGCCCGACGACGACTCCGCCT
CACCACCCTCTTTGACTGCTAAGGGTGTTGTGGTGATTTTCCTCAGCCTG
CCAAGGCCACGATCAGGCTGAGGCCCTGCCACAACATCGTCCCAAAGCTT
CTCTAGCATCTTTAAATCCTCGTG
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