CB291042

Overview
NameCB291042
Unique NameCB291042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.068e-24
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRH--PSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD  LTEK DY  A A++ +S+ L  +R+  +R  A   MV   L+   T+H+ YL F   DYG+NM     + +  LL W  W  + R   P  W+  +VV       LLE+ DFPP +  LDAHA+WH +T+P+ ++++SF+ DD+
Sbjct:  155 RDTYLTEKMDYFCASAVILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYGYNMAANASIGIINLLWWLCWCWLNRRILPYWWRCGMVVLLLHGLALLELLDFPPLFWVLDAHAVWHLSTVPVHFLFYSFLIDDS 302          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_MOUSE (Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR----HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD DLTEK DY  A A++  S+ L  +R+  ++  +      A LL  +T HI YL+    DYG+NM   V + +  L  W  W    R    H  R  + VV+  G    LLE+ DFPP +  LDAHAIWH +TIP+  +++ F+ DD+
Sbjct:  159 RDTDLTEKMDYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHTRRCMVVVVLLQG--LSLLELLDFPPLFWVLDAHAIWHISTIPVHTLFFRFLEDDS 306          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_HUMAN (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 56/148 (37.84%), Postives = 82/148 (55.41%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD DLTEK DY  A  ++  S+ L  +R+  ++  A      A LL  +T H+ YL+  + DYG+N+   V + +  ++ W  W      R P   K  VVV       LLE+ DFPP +  LDAHAIWH +TIP+  +++SF+ DD+
Sbjct:  159 RDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDS 306          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_XENLA (Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD  LTEK DY  A +++  S+ L  +R+F ++  +      A L+     HI YL   + DY +NM       +  L+ W  W    R   P  WK  +VV       LLE+ DFPP    LDAHA+WH +TIPL ++++SF+RDD+
Sbjct:  154 RDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLGRFDYSYNMAANTSFGIVNLMWWLAWCMWRRFHQPYLWKCVLVVVLLQSLALLELLDFPPVMWILDAHALWHFSTIPLHFLFYSFLRDDS 301          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_XENTR (Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD  LTEK DY  A +++  S+ L  +R+F ++  +      A L+     H+ YL   + DY +NM       V  L+ W  W    R   P  WK  +VV       LLE+ DFPP    LDAHA+WH +T+PL ++++SF++DD+
Sbjct:  154 RDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGRFDYSYNMAANTGFGVLNLMWWLAWCFRRRFHQPYLWKCVLVVISLQSLALLELLDFPPVMWILDAHALWHFSTVPLHFLFYSFLKDDS 301          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_BOVIN (Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = -1
Query:  370 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA-GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAEFQTANMLKKAK 843
            RD DLTEK DY  A  ++  S+ L  +R+  ++  A      A LL  +T H+ YL+    DYG+NM   V + +     W  W     R P   K   VV       LLE+ DFPP +  LDAHAIWH +TIP+  +++SF+ DD+ +       K K
Sbjct:  159 RDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYGYNMAANVAIGLLNAAWWLAWCLWNQRLPHVHKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDSLYLLKESEAKVK 317          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_CRIGR (Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.923e-20
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = -1
Query:  406 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 843
            RD DLTEK DY  A A++  S+ L  +R+  ++  +      A LL  +  H  YL+  + DY +NM   V + +  L  W  W      R P   K   VV       LLE+ DFPP +  LDAHAIWH +TIP+  +++ F+ DD+
Sbjct:  159 RDTDLTEKMDYFCASAVILHSIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYSYNMMANVAIGLVNLAWWLAWCLRNHRRLPHTRKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFRFLEDDS 306          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PER1_SCHPO (Protein PER1 homolog OS=Schizosaccharomyces pombe GN=SPAC823.07 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  418 RDVDLTEKFDYSSAVALLGF----SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHP----SRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFI 843
            RD  +TEK DY SA A + F    +LIL +        +    ++    +A    H+ YL+FY  DYG+NMK  V + + Q ++W  ++   R+     +RW  ++V     LA  LE++DF P    +DAHA+WH +T+P+T+  + F+
Sbjct:  161 RDTPITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVT-SLMLATSLELFDFSPIANLIDAHALWHLSTVPITHYLYGFV 309          
BLAST of CB291042 vs. ExPASy Swiss-Prot
Match: PGAP3_DROME (Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=CG3271 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.546e-15
Identity = 47/144 (32.64%), Postives = 73/144 (50.69%), Query Frame = -1
Query:  418 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGI--TRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFI 843
            RD  LTE  DY+ A +++  SL + ++R  +      R ++    L++   +  YL+  + +Y +NM V V   V   + W  W     TR P   ++       ALAM LE+ DFPP    LDAHA+WH  TIPL  +++  +
Sbjct:  166 RDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFAYLSVGRFNYAFNMMVNVATGVIAAVGWFVWCHFVRTRRPYFRRILRFYILMALAMSLELLDFPPILWILDAHALWHLATIPLASLYYECV 309          
The following BLAST results are available for this feature:
BLAST of CB291042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGAP3_DANRE1.068e-2438.51Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
PGAP3_MOUSE1.106e-2138.67Post-GPI attachment to proteins factor 3 OS=Mus mu... [more]
PGAP3_HUMAN1.886e-2137.84Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
PGAP3_XENLA2.463e-2137.16Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_XENTR5.487e-2135.81Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_BOVIN9.360e-2136.48Post-GPI attachment to proteins factor 3 OS=Bos ta... [more]
PGAP3_CRIGR7.923e-2036.49Post-GPI attachment to proteins factor 3 OS=Cricet... [more]
PER1_SCHPO9.686e-1833.33Protein PER1 homolog OS=Schizosaccharomyces pombe ... [more]
PGAP3_DROME1.546e-1532.64Post-GPI attachment to proteins factor 3 OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291042 ID=CB291042; Name=CB291042; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTAGCTTAGCGTTTTATTTTTTTATTTTTTTTGGG
GGTAATTGAAATTTCTGTTGTTTCTTTTGGCTAGAGCACAAGTGTACAGA
AATCATATTTGTTTACAATAAGCTGCTCTGTCTTCTCAAGTAAGGTAAGA
AGTTCGAAACTCAGCTTCATCTCTTATCAAACGTCAACTGTTGGTAAGGG
GCCATTGTCACCGGCTTCTAAAAGGGCCAGCTCACCTCCTAAAACCATCA
CACCGGCAACTTTTAGCAAGAGAGATGTCAAGCGACAGACGTAAATTGCC
CAGATGGGAAGCATAACTGAGCCATTGCCGCGGCACTGGCTTTTATGGCC
TACCATTTTCAGTAAGCTACTTTGCCTTCTTAAGCATGTTAGCAGTTTGG
AACTCAGCGTCATCCCTGATAAAACTCCACCAAATGTAGGTAAGAGGTAT
AGTCGTCGCATGCCAGATAGCATGGGCATCCAGGAAACCATAATATGGGG
GGAAATCATAGATTTCTAGCAGCATTGCAAGGGCACCTCCGAACACCACC
ACCCACAACTTCCAGCGAGAAGGATGCCGAGTGATACCAGCCCAAGTTGC
CCAGATGAGAAGCTGAGCCACTGCCATGACAACACAAACTTTCATGTTCC
ATCCATAATCTAGTTTATAGAAATTGAGGTACAATATATGGGTTGTCACA
AAAGCGAGCAGTGGAGCAGCAACCATGACTCTAGCAGCCTCATCTCTCAC
GTTGAAACTTCTTAGTATCGCCAGAATGAGCGAGAACCCAAGTAATGCCA
CAGCAGATGAGTAGTCAAACTTCTCTGTCAAGTCCACATCTCT
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