CB291043

Overview
NameCB291043
Unique NameCB291043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = -3
Query:  406 FSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRH--PSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 786
            +S+ L  +R+  +R  A   MV   L+   T+H+ YL F   DYG+NM     + +  LL W  W  + R   P  W+  +VV       LLE+ DFPP +  LDAHA+WH +T+P+ ++++SF+ DD+
Sbjct:  174 YSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYGYNMAANASIGIINLLWWLCWCWLNRRILPYWWRCGMVVLLLHGLALLELLDFPPLFWVLDAHAVWHLSTVPVHFLFYSFLIDDS 302          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_XENLA (Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  406 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 783
            S+ L  +R+F ++  +      A L+     HI YL   + DY +NM       +  L+ W  W    R   P  WK  +VV       LLE+ DFPP    LDAHA+WH +TIPL ++++SF+RDD+
Sbjct:  174 SIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLGRFDYSYNMAANTSFGIVNLMWWLAWCMWRRFHQPYLWKCVLVVVLLQSLALLELLDFPPVMWILDAHALWHFSTIPLHFLFYSFLRDDS 301          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_XENTR (Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  406 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 783
            S+ L  +R+F ++  +      A L+     H+ YL   + DY +NM       V  L+ W  W    R   P  WK  +VV       LLE+ DFPP    LDAHA+WH +T+PL ++++SF++DD+
Sbjct:  174 SIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGRFDYSYNMAANTGFGVLNLMWWLAWCFRRRFHQPYLWKCVLVVISLQSLALLELLDFPPVMWILDAHALWHFSTVPLHFLFYSFLKDDS 301          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_HUMAN (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = -3
Query:  406 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 783
            S+ L  +R+  ++  A      A LL  +T H+ YL+  + DYG+N+   V + +  ++ W  W      R P   K  VVV       LLE+ DFPP +  LDAHAIWH +TIP+  +++SF+ DD+
Sbjct:  179 SIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDS 306          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_MOUSE (Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.295e-16
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = -3
Query:  406 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITR----HPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 783
            S+ L  +R+  ++  +      A LL  +T HI YL+    DYG+NM   V + +  L  W  W    R    H  R  + VV+  G    LLE+ DFPP +  LDAHAIWH +TIP+  +++ F+ DD+
Sbjct:  179 SVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHTRRCMVVVVLLQGL--SLLELLDFPPLFWVLDAHAIWHISTIPVHTLFFRFLEDDS 306          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_BOVIN (Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  370 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA-GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAEFQTANMLKKAK 783
            S+ L  +R+  ++  A      A LL  +T H+ YL+    DYG+NM   V + +     W  W     R P   K   VV       LLE+ DFPP +  LDAHAIWH +TIP+  +++SF+ DD+ +       K K
Sbjct:  179 SIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYGYNMAANVAIGLLNAAWWLAWCLWNQRLPHVHKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDSLYLLKESEAKVK 317          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PER1_SCHPO (Protein PER1 homolog OS=Schizosaccharomyces pombe GN=SPAC823.07 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 36/107 (33.64%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  418 MVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHP----SRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFI 726
            ++    +A    H+ YL+FY  DYG+NMK  V + + Q ++W  ++   R+     +RW  ++V     LA  LE++DF P    +DAHA+WH +T+P+T+  + F+
Sbjct:  204 IIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVT-SLMLATSLELFDFSPIANLIDAHALWHLSTVPITHYLYGFV 309          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_CRIGR (Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = -3
Query:  406 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 783
            S+ L  +R+  ++  +      A LL  +  H  YL+  + DY +NM   V + +  L  W  W      R P   K   VV       LLE+ DFPP +  LDAHAIWH +TIP+  +++ F+ DD+
Sbjct:  179 SIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYSYNMMANVAIGLVNLAWWLAWCLRNHRRLPHTRKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFRFLEDDS 306          
BLAST of CB291043 vs. ExPASy Swiss-Prot
Match: PGAP3_DROME (Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=CG3271 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = -3
Query:  418 SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGI--TRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFI 783
            SL + ++R  +      R ++    L++   +  YL+  + +Y +NM V V   V   + W  W     TR P   ++       ALAM LE+ DFPP    LDAHA+WH  TIPL  +++  +
Sbjct:  186 SLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFAYLSVGRFNYAFNMMVNVATGVIAAVGWFVWCHFVRTRRPYFRRILRFYILMALAMSLELLDFPPILWILDAHALWHLATIPLASLYYECV 309          
The following BLAST results are available for this feature:
BLAST of CB291043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGAP3_DANRE7.185e-2036.43Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
PGAP3_XENLA7.436e-1735.94Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_XENTR1.657e-1634.38Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_HUMAN3.690e-1635.94Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
PGAP3_MOUSE6.295e-1636.15Post-GPI attachment to proteins factor 3 OS=Mus mu... [more]
PGAP3_BOVIN1.831e-1534.53Post-GPI attachment to proteins factor 3 OS=Bos ta... [more]
PER1_SCHPO1.187e-1433.64Protein PER1 homolog OS=Schizosaccharomyces pombe ... [more]
PGAP3_CRIGR4.511e-1433.59Post-GPI attachment to proteins factor 3 OS=Cricet... [more]
PGAP3_DROME1.604e-1131.45Post-GPI attachment to proteins factor 3 OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291043 ID=CB291043; Name=CB291043; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTTTTAGCTTAGCGTTTTATTTTTTTCTTTTTTTTGGG
GTTAATTGAAATTTCTGTTGTTTCTTTCGGCTAGAGCACAAGTGTACAGA
AATCATATTTGTTTACAATAAGCTGCTCTGTCTTCTCAAGTAAGGTAAGA
AGTTCGAAACTCAGCTTCATCTCTTATCAAACGTCAACTGTTGGTAAGGG
GCCATTGTCACCGGCTTCTAAAAGGGCCAGCTCACCTCCTAAAACCATCA
CACCGGCAACTTTTAGCAAGAGAGATGTCAAGCGACAGACGTAAATTGCC
CAGATGGGAAGCATAACTGAGCCATTGCCGCGGCACTGGCTTTTATGGCC
TACCATTTTCAGTAAGCTACTTTGCCTTCTTAAGCATGTTAGCAGTTTGG
AACTCAGCGTCATCCCTGATAAAACTCCACCAAATGTAGGTAAGAGGTAT
AGTCGTCGCATGCCAAATAGCATGGGCATCCAGGAAACCATAATATGGGG
GGAAATCATAGATTTCTAGCAGCATTGCAAGGGCACCTCCGAACACCACC
ACCCACAACTTCCAGCGAGAAGGATGCCGAGTGATACCAGCCCAAGTTGC
CCAGATGAGAAGCTGAGCCACTGCCATGACAACACAAACTTTCATGTTCC
ATCCATAATCTAGTTTATAGAAATTGAGGTACAATATATGGGTTGTCACA
AAAGCGAGCAGTGGAGCAGCAACCATGACTCTAGCAGCCTCATCTCTCAC
GTTGAAACTTCTTAGTATCGCCAGAATGAGCGAGAACCCAAGTA
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