CB291051

Overview
NameCB291051
Unique NameCB291051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.401e-81
Identity = 151/166 (90.96%), Postives = 160/166 (96.39%), Query Frame = -3
Query:  261 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIPLD 758
            MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKH+G+I+LDDVIEIAK+M+ RSMAK+L+G VKEIL TCV VGCTVDGKDP+DLQQEI DGDVEIPLD
Sbjct:    1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.737e-79
Identity = 145/164 (88.41%), Postives = 156/164 (95.12%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDVIEIAK+MRPRS+AK+LSG VKEILGTCV VGCTVDGKDP+DLQ+EI  GD++IP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 6.602e-79
Identity = 144/164 (87.80%), Postives = 156/164 (95.12%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSG V+EILGTCV VGCTVDGKDP+D+QQEI DG+VEIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.471e-78
Identity = 143/164 (87.20%), Postives = 156/164 (95.12%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSG V+EILGTCV VGCTVDGKDP+DLQQEI +G++EIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.062e-64
Identity = 123/155 (79.35%), Postives = 136/155 (87.74%), Query Frame = -3
Query:  267 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 731
            VV+V VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G++T+ D+IEIA+VMRPRS AKDL+   KEILGT V VGC VDGKDPRD+   I DG +EIP
Sbjct:    1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.746e-63
Identity = 116/164 (70.73%), Postives = 143/164 (87.20%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPKFDP++V  +++R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK KN+ H+GN++LD++IE+A+ MR +S+AK+LSG VKEILGT   VGCTVDGK+P D+Q+EI +G++EIP
Sbjct:    1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.634e-61
Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L G VKEILGT   VGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.634e-61
Identity = 111/164 (67.68%), Postives = 139/164 (84.76%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L G VKEILGT   VGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.134e-61
Identity = 113/164 (68.90%), Postives = 137/164 (83.54%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKHNGNIT D+++ IA+ MR RS+A++LSG +KEILGT   VGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 6.208e-61
Identity = 113/164 (68.90%), Postives = 137/164 (83.54%), Query Frame = -3
Query:  267 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIP 758
            MPPKFDP++V  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSG +KEILGT   VGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of CB291051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL12_PRUAR5.401e-8190.9660S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH1.737e-7988.4160S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH6.602e-7987.8060S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH1.471e-7887.2060S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_CHLRE2.062e-6479.3560S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_SCHPO1.746e-6370.7360S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CAEEL1.634e-6167.6860S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR1.634e-6167.6860S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT2.134e-6168.9060S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE6.208e-6168.9060S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291051 ID=CB291051; Name=CB291051; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTGTATTTTAAAGTTCAAAGATCCAATATACCCTTTTCTG
AAGCATCATTCAACATAAGTCCACTAAATTAAACCTTACATCTCCTAAAT
TCCAATAATAAAGCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCA
AAATCCTTGTAAAGATCCAAAACTGATAATTAAAAAAAAAGGGACTGATA
TATAGAGATAAAAACAAAAATTAAAATCTAAAATAGACCCCCTCACAAAC
AGAGTCTTCAATCAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGC
TGGAGGTCCCTAGGGTCCTTGCCATCGACCGTACACCCAACAAAAACGCA
TGTGCCCAAAATCTCCTTAACGGGGCCACTCAAATCCTTAGCCATCGACC
TGGGCCGCATCACTTTTGCGATTTCGATGACGTCATCGAGGGTAATGTTG
CCGTTGTGCTTGATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTT
GAGGGCTTTAATCACCAGGGCGGCGGCGGAGGGAACAACGGCGACCTTGG
CCTGACGGTTCTGGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAG
TCCTTGGCGGTTTCCTTGGCGATGTCCTCTCCGATTTTCTTTGGGGAGAG
ACCGAGGGGACCGATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGC
CACCGGTCACGCGGACGTACACGTCCACCACTTGGCTCGGGTCAAACTTC
GGCGGCATGATTGCTCTGCTGGTTACGGCTA
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