CB291064

Overview
NameCB291064
Unique NameCB291064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.354e-44
Identity = 92/155 (59.35%), Postives = 113/155 (72.90%), Query Frame = -3
Query:  350 ILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 814
            + DLVEASKK+ T+ QF +D SVP +TRVNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:   90 LYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.716e-35
Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = -3
Query:  341 DLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 808
            +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:   83 EMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = -3
Query:  362 VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 748
            V    +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   83 VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 42/129 (32.56%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  362 VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 748
            V    +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   83 VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = -3
Query:  362 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 733
            +V ++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                   L            DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = -3
Query:  362 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 733
            +V ++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   88 KVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = -3
Query:  362 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 733
            +V ++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   88 KVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  362 VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 748
            V    +V +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L           +DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   83 VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 38/131 (29.01%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  356 VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 748
            V    +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   83 VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CB291064 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = -3
Query:  356 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 733
            +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of CB291064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_IPOBA3.354e-4459.35ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH3.716e-3550.00ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB3.616e-1433.33ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN1.795e-1332.56ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE1.163e-1230.65ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_MOUSE1.163e-1233.06ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT1.984e-1231.45ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_BOVIN2.592e-1230.23ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_CALMO7.540e-1229.01ATP synthase subunit O, mitochondrial OS=Callicebu... [more]
ATPO_CALJA7.540e-1230.16ATP synthase subunit O, mitochondrial OS=Callithri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291064 ID=CB291064; Name=CB291064; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTTTGTTCATCAAAAGAGCTTTTGTCCTTAAGAACCGTATCATG
TGCAGGACCGAGTAATTATTTGAACACACAAATTATACCCTTAAAAGATA
ATGGTCCGAACCGAAACCCAAACAAAAAATGTTGCCGTCCATCAGAACCA
TTTGCCATGAAAGCAAAGTGATCAAGATGTGAATTTTATTTTGCCAATGA
TTCAATTCATTCAGAAATGGCGGAGCACAAGCAAACAGCACCAAACAAAA
GCATGAATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATAATCA
TCTTGAAAATTTGGGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGTGCCA
AAATGAATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAGACTT
AATGGACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCACCAA
GAATGCTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTGGCCA
AGTGTCTCTTGCAGTGTCTCTTTCAACTCTTTCTCTTCTTCTGGGGGAAG
TGGAATAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCCATGG
TTAACTCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCTCCCA
TTCTCAGCCAAAACAACCAAGAAGTGCTTCGTAACATCTGAAAATTTAGC
CTGAGTACAGATTTCGTTAATGGCATTAACTCTCGTCTCTGCAGGCACAG
ACAAGTCCTTTGTGAACTGAAAATATGTATCAGCCTTCTTTGAAGCCTCA
ACAAGGTCAAGAATCT
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