CB291065

Overview
NameCB291065
Unique NameCB291065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.034e-31
Identity = 77/212 (36.32%), Postives = 129/212 (60.85%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A ++ PS++F+DE+DS+L  R   GEH+A R++K EF++ +DG+++   ERVLV+ ATNRP +LDEAV+RR  +R+ V LP    R K+++ +L+K     S  +L  +A + DGYSGSDL +L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +++ ++WN  YG+
Sbjct:  372 GEKLVRALFAVARELQPSIIFIDEIDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRN--------------MSAHEMRDIRISDFLESLKRIKRSVSPQT--LDQYVRWNREYGD 566          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.350e-31
Identity = 69/138 (50.00%), Postives = 98/138 (71.01%), Query Frame = -1
Query:  500 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 913
            +K   AVFSLA KI P ++F+DE+DS L  R +  +HEA   MK +FM  WDGL T +  +V+V+ ATNRP D+D A++RR+P    V LP+A  RE+I+R+IL+ E L++ ++L+ IA+ ++GYSGSDLK LC  AA
Sbjct:  174 QKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSM-DHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAA 310          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.007e-31
Identity = 79/213 (37.09%), Postives = 126/213 (59.15%), Query Frame = -1
Query:  281 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 916
            GEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   SD + + +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A + V  +VS +   + E   WNE +G G
Sbjct:  487 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGP--------------IRSLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYE--NWNETFGCG 682          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.700e-31
Identity = 79/213 (37.09%), Postives = 125/213 (58.69%), Query Frame = -1
Query:  281 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 916
            GEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   +D + E +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  481 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGP--------------IRSLHTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 676          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 133.65 bits (335), Expect = 1.493e-30
Identity = 69/141 (48.94%), Postives = 100/141 (70.92%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            GEK V+A+F++A ++ PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++V+AATNRP +LDEA +RR P+R+ V LPD   RE ++R +L K+    SD DL  +A + +GYSGSDL  L   AA
Sbjct:  580 GEKLVRALFAVARELQPSIIFIDEVDSVLSERSS-NEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAA 719          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.493e-30
Identity = 79/213 (37.09%), Postives = 124/213 (58.22%), Query Frame = -1
Query:  281 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 916
            GEK V+A+F++A    P+V+F+DE+DS+L +R   GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          ++  VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  459 GEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 654          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.949e-30
Identity = 80/213 (37.56%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  281 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 916
            GEK V+A+F++A    P+V+F+DE+DS+L +R   GEHE+ R++K EF+V  DG  T   +R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  ++AKE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  460 GEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITPEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 655          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.949e-30
Identity = 76/198 (38.38%), Postives = 108/198 (54.55%), Query Frame = -1
Query:  320 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 913
            +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  171 QKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.949e-30
Identity = 76/198 (38.38%), Postives = 108/198 (54.55%), Query Frame = -1
Query:  320 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 913
            +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  171 QKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.546e-30
Identity = 78/213 (36.62%), Postives = 124/213 (58.22%), Query Frame = -1
Query:  281 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 916
            GEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   S+ ++E I   +D +SG+D+  LC  A+  P                    A     +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  478 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP--------------IRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 673          
The following BLAST results are available for this feature:
BLAST of CB291065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SPAST_DANRE1.034e-3136.32Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
ATD1A_DANRE1.350e-3150.00ATPase family AAA domain-containing protein 1-A OS... [more]
FIGL1_MOUSE3.007e-3137.09Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_RAT6.700e-3137.09Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
SPAST_ANOGA1.493e-3048.94Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
FIGL1_XENLA1.493e-3037.09Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
FIGL1_XENTR1.949e-3037.56Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
ATAD1_MOUSE1.949e-3038.38ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN1.949e-3038.38ATPase family AAA domain-containing protein 1 OS=H... [more]
FIGL1_HUMAN2.546e-3036.62Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291065 ID=CB291065; Name=CB291065; organism=Citrus sinensis; type=EST; length=916bp
TTTTTTTTTTTTTTTTTAACGAAGGAAAATAACACTTTTGATTTAAGTTA
ACCTGCTTGATGAATATAAAAAAGAATTCCTAACAAAAGGGTAAAAGCTT
CCAAAACCTATATATATTACAATGAAAAAGGGACAGCCCAACAGAATTCT
CCATAAATACAGGTCCCTGATCTTGGCCATCATTTAGGATGATAAAGACG
AATAAACCACACAAGAATGCTATACAAAAGAGATACCACCTCTACATAAA
GTAGCTCAGAGATTTCCTTTTCCTCGATCCACCTTCTCCATATAGTTCAT
TCCATTGAAGGAGCTCATTCATATTTGTAGACTCTGATGATACACTTGCA
CACACCTGCTCATGTGCATATTTGAAATCGTCCATCTTCAGAGGGCGAAC
GTCGACGCTGCTGTACAATGGAGGTGAAGCTCTATTCTCGGCCAATGCTA
AAGCTCTCTCCTTCTTTTCCTTCTCCAAAATTTCTCGTATGGGACAATGT
GCGGCAGTCACACACAGGTTCTTTAGATCACTTCCAGAGTACCCATCAGC
CATGTTTGCAATTCCTTCCAAATCCACATCAGATGCCAATTCTTCTTTGG
CCAAGATAACTCTTATAATCTTTTCTCTGTTTGGGGCATCTGGCAAGTTA
ACCATCAATCTCCTTGGAAGCCTCCTAACAACAGCCTCATCAAGGTCAAA
AGGCCTATTGGTAGCAGCAAGTACCAGAACTCGTTCTTTATCCTTTGTGC
GCAAACCATCCCAGTTAACCATGAATTCGTTCTTCATTTTACGCATAGCT
TCATGCTCTCCTGGATTTTCCCGTCTTCCTAACATGCTGTCAACCTCATC
AACAAAAACAACACTTGGAGCAATTTTACTGGCCAGAGAGAAGACTGCTT
TAACATACTTCTCTCC
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