CB291100

Overview
NameCB291100
Unique NameCB291100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 102/187 (54.55%), Postives = 139/187 (74.33%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 102/187 (54.55%), Postives = 139/187 (74.33%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.604e-56
Identity = 102/187 (54.55%), Postives = 139/187 (74.33%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 1.248e-55
Identity = 101/187 (54.01%), Postives = 139/187 (74.33%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.630e-55
Identity = 101/187 (54.01%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.630e-55
Identity = 101/187 (54.01%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.630e-55
Identity = 101/187 (54.01%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.630e-55
Identity = 101/187 (54.01%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  241 LSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.292e-52
Identity = 97/187 (51.87%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  241 LSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of CB291100 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.292e-52
Identity = 98/187 (52.41%), Postives = 138/187 (73.80%), Query Frame = -1 
Query:  316 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 876
            LSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA VST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  241 LSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of CB291100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT4.291e-5654.55Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA4.291e-5654.55Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN5.604e-5654.55Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE1.248e-5554.01Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY1.630e-5554.01Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR1.630e-5554.01Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA1.630e-5554.01Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN1.630e-5554.01Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_HUMAN1.292e-5251.87Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA1.292e-5252.41Rab GDP dissociation inhibitor beta OS=Canis famil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291100 ID=CB291100; Name=CB291100; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAATCAAGCTGAAAAATTTAAGATATAATTTAAG
CAAATTAAAGATGCATGTTTGAAATCTACACATTAGTTCCCACGGCGAAC
AATTAAAACAAGATTCCATTACATAATAATAATAATAAAATCACCAACTA
TGAGAAACAGAAACCATGACAAAGTCCAAGTGTCCAACCCCCACATTCTT
TCGAGCTTTATCCCACTGACGGCATTACATGCGCAAACATGAACGGGGAG
TTGCAGATTCCTCATTCTTCTGCAGCACTGGCAGCACTTAAATCCACACT
GAGGTCAAGAACCTTTCCGGTTATCATGGTATACATGTTCAGTACATCCG
TGACAGTTGACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGAGATAAAG
CAATTGTCCAAAGAAGGTTCATTAACTGGTTCATATCTGTCATATATATC
ATAGAATATTTCATCGACTGGACCCAAAAGATCAATTCCAGGCTTAAGTT
CAGTCTGTGGATGATCAGTCTCTGCCTCAGTCGATACGAATGCAATGAAT
TTGCCCTTTGGAGCAACATTGTGGGAGTAGGAACAACAGAAGAGGTACAT
GTCTGATCTACGACCCAACTGTTTTTGCGGAAGGATAACCTGCACTGAAT
GGGAATCATTGGTGTTTGGGATTGGGTGGCTCATAATAGCGATTGCCCTA
GCAACCCTGCCAACCTTCCTCACCTTGTTGGGCAAATAGGAAGGATCACA
AACAACTTTCTTGCACTTTGCAGTTTCCCCTTCTGACGTGACACCGACTA
CTTTACCTTCTTCATCAAACTCTACCTTGCACTCAGGTTTATTCAACATA
TACGTCCCACCATAAACAGCACTAAG
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