CB291108

Overview
NameCB291108
Unique NameCB291108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  295 SPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNF 720
            S P C     TPKC + C       ++  K    S+Y I+ + + IMAEI+KNGPVE +F VY DF  YK GVY+ + GD+MGGHA++++GWG  ++G  YW+  N WN  WG +GFFKI RG + CGIE ++V G P + +F
Sbjct:  194 SRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 335          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  295 SPPGCEPAYLTPKCVRKC-VKKNQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNF 720
            S P C     TPKC + C    +  ++  K    ++Y ++   + IMAEI+KNGPVE +F V+ DF  YK GVYK   GDVMGGHA++++GWG  ++G  YW+ AN WN  WG +GFFKI RG N CGIE ++V G P ++ +
Sbjct:  194 SRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQQY 335          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = -3
Query:  283 SPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEI 720
            S P C     TPKC + C    +  ++  K    ++Y ++   + IMAEI+KNGPVE +F VY DF  YK GVY+ + G++MGGHA++++GWG  ++G  YW+ AN WN  WG +GFFKI RG + CGIE +VV G P +  + ++I
Sbjct:  194 SRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = -3
Query:  283 SPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEI 720
            S P C     TPKC + C    +  ++  K    ++Y ++   + IMAEI+KNGPVE +F VY DF  YK GVY+ + G++MGGHA++++GWG  ++G  YW+ AN WN  WG +GFFKI RG + CGIE +VV G P +  + ++I
Sbjct:  194 SRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.535e-33
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = -3
Query:  283 SPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEI 720
            S P C     TPKC + C    +  ++  K    ++Y ++     IMAEI+KNGPVE +F VY DF  YK GVY+ + G++MGGHA++++GWG  ++G  YW+ AN WN  WG +GFFKI RG + CGIE +VV G P +  + ++I
Sbjct:  194 SRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSERDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 75/168 (44.64%), Postives = 91/168 (54.17%), Query Frame = -3
Query:  283 STGCSP---PGCE-------------PAYLTPKCVRKCVKK--NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEI 732
            + GC P   P CE               Y TPKC +KCV    ++ +   K    SAY +  D E I  E+  +GP+E++F VYEDF  Y  GVY    G + GGHAVKLIGWG  DDG  YW  AN WN  WG DGFF+I RG +ECGIE  VVGG P   +    +
Sbjct:  200 NNGCKPYPFPPCEHHSKKTHFDPCPHDLYPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGI-DDGIPYWTVANSWNTDWGEDGFFRILRGVDECGIESGVVGGIPKLNSLTSRL 366          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 68/138 (49.28%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  310 PGC-EPAYLTPKCVRKCVKKNQ--LWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFP 714
            P C +  Y TP CV KC  KN    +   K    +AY +      I AEI  +GPVE +F VYEDF  YK GVY    G  +GGHA++++GWGT D+G  YW+ AN WN +WG +G+F+I RG+NECGIE  VVGG P
Sbjct:  197 PSCPDDGYDTPACVNKCTNKNYNVAYTADKHFGSTAYAVGKKVSQIQAEIIAHGPVEAAFTVYEDFYQYKTGVYVHTTGQELGGHAIRILGWGT-DNGTPYWLVANSWNVNWGENGYFRIIRGTNECGIEHAVVGGVP 333          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 64/143 (44.76%), Postives = 90/143 (62.94%), Query Frame = -3
Query:  295 SPPGCEPAYLTPKCVRKC-VKKNQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNF 720
            S P C     TP+C + C    +  ++  K    ++Y ++   + IMAEI+KNGPVE +F V+ DF  YK GVYK   GD+MGGHA++++GWG  ++G  YW+ AN WN  WG +GFFKI RG N CGIE ++V G P +  +
Sbjct:  194 SRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGV-ENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIPRTDQY 335          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = -3
Query:  295 SPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNF 720
            S P C     TPKC + C    +  ++  K    S+Y +  + + IMAEI+KNGPVE +F VY DF  YK GVY+ + G++MGGHA++++GWG  ++G  YW+  N WN  WG +GFFKI RG + CGIE ++V G P +  +
Sbjct:  194 SRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMPCTHQY 335          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 64/145 (44.14%), Postives = 90/145 (62.07%), Query Frame = -3
Query:  295 GCSPPGCEPAYLTPKCVRKCVKK-NQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNF 726
            G  PP       TP+C R C    +  ++  K   I++Y +    + IMAEI+KNGPVE +F VYEDF  YK GVY+ + G+ +GGHA++++GWG  ++G  YW+ AN WN  WG  GFFKI RG + CGIE ++V G P  + +
Sbjct:  193 GSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGV-ENGTPYWLAANSWNTDWGITGFFKILRGEDHCGIESEIVAGVPRMEQY 336          
The following BLAST results are available for this feature:
BLAST of CB291108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CATB_PIG1.720e-3346.15Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_RAT2.933e-3346.15Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA5.003e-3344.22Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN5.003e-3344.22Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_PONAB6.535e-3344.22Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CPR6_CAEEL8.535e-3344.64Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CPR4_CAEEL1.115e-3249.28Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CATB_MOUSE1.901e-3244.76Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN1.901e-3244.06Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK1.610e-3144.14Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291108 ID=CB291108; Name=CB291108; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTAAGCAATGATGGGACATTTTTCATCTAAACGAA
TAATTCGGGGAGGAAAAACCAAGTTATTACAACTGGTTCTATTTTTACAC
CCAACATTAAACTCCATTAATACATTCAATTATGCAAAACGGGAGCTTCC
CATTTCATGCCTTGATAGCTTAGGGTCAACGAAACCCCCCTATAGCTACA
CATTTGATATATAAAAAACAACATGAAGGGATAACAAAGTCTGCTCTCAA
GCTGAAGCATCCCCAAACATATCTGCACTTGTAATCTCTTTGACAAAATT
TTTGGATGAAGGGAAACCACCAACCACATCCTCTTCAATACCACACTCAT
TTGATCCTCTTTTAATCTTGAAGAAACCATCCCCACCCCAGCTTCTATTC
CACTGATTAGCGAAAATCCAGTAATCCTCGCCATCATCACTAGTTCCCCA
ACCAATAAGCTTAACAGCATGACCCCCCATTACATCCCCTGGGATGGGTT
TGTAAACCCCAAATTTGTAGGGAGCAAAATCCTCATAAACTGGGAAGGAA
ACTTCAACTGGGCCATTCTTGAAAATTTCTGCCATTATGCCCTCTGGATC
AAAATTGATTCTATATGCACTAATACTGGAGGGCTTTGAATTCCTCCAAA
GCTGGTTTTTCTTGACGCACTTCCTCACACACTTTGGAGTAAGATATGCC
GGCTCACAACCAGGGGGGGAACAGCCAGTACTATCAA
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