CB291109

Overview
NameCB291109
Unique NameCB291109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   S+Y I+ + + IMAEI+KNGPVE +F VY DF  YK GV + + GD+MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++V G P + +F
Sbjct:  223 KHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.460e-30
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   ++Y ++   + IMAEI+KNGPVE +F V+ DF  YK GV K   GDVMGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG N CGIE ++V G P ++ +
Sbjct:  223 KHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   ++Y ++   + IMAEI+KNGPVE +F V+ DF  YK GV K   GD+MGGHA++++GWG  ++G  YW+ AN WN  WG +G+FKI RG N CGIE ++V G P +  +
Sbjct:  223 KHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGV-ENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIPRTDQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 55/114 (48.25%), Postives = 80/114 (70.18%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   ++Y ++   + IMAEI+KNGPVE +F VY DF  YK GV + + G++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VV G P +  +
Sbjct:  223 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 55/114 (48.25%), Postives = 80/114 (70.18%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   ++Y ++   + IMAEI+KNGPVE +F VY DF  YK GV + + G++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VV G P +  +
Sbjct:  223 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-29
Identity = 55/114 (48.25%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   ++Y ++     IMAEI+KNGPVE +F VY DF  YK GV + + G++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VV G P +  +
Sbjct:  223 KHYGYNSYSVSNSERDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-29
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH   S+Y +  + + IMAEI+KNGPVE +F VY DF  YK GV + + G++MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++V G P +  +
Sbjct:  223 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMPCTHQY 335          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.595e-29
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = -2
Query:  309 NQLWGNSKHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFP 656
            N  +   KH   +AY +      I AEI  +GPVE +F VYEDF  YK GV     G  +GGHA++++GWGT D+G  YW++AN WN +WG +GYF+I RG+NECGIE  VVGG P
Sbjct:  219 NVAYTADKHFGSTAYAVGKKVSQIQAEIIAHGPVEAAFTVYEDFYQYKTGVYVHTTGQELGGHAIRILGWGT-DNGTPYWLVANSWNVNWGENGYFRIIRGTNECGIEHAVVGGVP 333          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.595e-29
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  315 WGNSKHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGG 647
            +   KH  +SAY +  +  +I AEI+ NGPVE +F VYEDF  YK GV K   G  +GGHA+K+IGWGT + G  YW++AN W  +WG  G+FKI RG ++CGIE  VV G
Sbjct:  216 YAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDFYKYKSGVYKHTAGKYLGGHAIKIIGWGT-ESGSPYWLVANSWGVNWGESGFFKIYRGDDQCGIESAVVAG 325          
BLAST of CB291109 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  294 KHSSISAYRINFDPEAIMAEIFKNGPVEVSFPVYEDFAPYKFGVSKPIPGDVMGGHAVKLIGWGTSDDGGDYWILANQWNKSWGADGYFKIKRGSNECGIEEDVVGGFPSSKNF 635
            KH  I++Y +    + IMAEI+KNGPVE +F VYEDF  YK GV + + G+ +GGHA++++GWG  ++G  YW+ AN WN  WG  G+FKI RG + CGIE ++V G P  + +
Sbjct:  224 KHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGV-ENGTPYWLAANSWNTDWGITGFFKILRGEDHCGIESEIVAGVPRMEQY 336          
The following BLAST results are available for this feature:
BLAST of CB291109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CATB_PIG5.017e-3150.00Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_RAT1.460e-3050.00Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_MOUSE9.461e-3049.12Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA9.461e-3048.25Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN9.461e-3048.25Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_PONAB1.236e-2948.25Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_BOVIN1.236e-2947.37Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CPR4_CAEEL3.595e-2950.86Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR1_CAEEL3.595e-2951.35Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
CATB_CHICK4.696e-2948.25Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291109 ID=CB291109; Name=CB291109; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTACCAATGAGGGGACATTTTTCATCCAAACCAAT
AATTCGGCGAGGAAAAACCAAGTTATTACAACTGGTTCTATTTTTACACC
CAACATTAAACCCCCTTAATACATTCAATTATGCAAAACGGGAACTTCCC
CTTTCATGCCTTGATAGCTTAGGGTCAACGAAACCCCCCTATAGCTACAC
ATTTGATATATAAAAAACAACATGAAGGGATAACAAAGTCTGCTCTCAAG
CTGAAACATCCCCAAACATATCTGCCCTTGTAATCCCTTTGACAAAATTT
TTGGAAGAAGGGAAACCACCAACCACATCCTCTTCAATACCACACTCATT
TGATCCTCTTTTAATCTTGAAGTAACCATCCGCCCCCCAACTTTTATTCC
ACTGATTAGCGAGAATCCAGTAATCCCCGCCATCATCACTAGTTCCCCAA
CCAATAAGCTTAACAGCATGACCCCCCATTACATCCCCTGGGATGGGTTT
GGAAACCCCAAATTTGTAGGGAGCAAAATCCTCATAAACTGGGAAGGAAA
CTTCAACTGGTCCATTCTTGAAAATTTCTGCCATTATGGCCTCTGGATCA
AAATTGATTCTATATGCACTAATACTGGAGTGCTTTGAATTCCCCCAAAG
CTGGTTTTTCTTG
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